Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 7.0e-93 344.0 177 100.0
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.1e-90 336.7 177 98.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.1e-85 318.2 177 94.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.4e-53 213.4 191 68.1
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.2e-49 200.3 193 64.8
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.2e-49 200.3 193 64.8
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.2e-49 200.3 199 62.8
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.2e-47 193.7 192 62.0
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 3.4e-47 192.2 188 63.3
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.8e-41 171.8 200 56.5
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.6e-39 166.0 185 56.8
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.6e-39 164.5 176 58.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.4e-37 159.5 177 58.2
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.2e-36 157.1 182 57.7
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.7e-36 156.0 190 55.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.0e-35 154.1 186 55.4
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.9e-34 149.8 183 53.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 3.3e-34 149.1 199 51.8
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 9.6e-34 147.5 183 53.6
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.6e-33 146.7 184 53.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.1e-33 146.4 180 53.9
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 8.1e-33 144.4 192 53.1
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 9.0e-32 141.0 170 55.9
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.5e-31 140.2 173 52.0
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.1e-29 134.0 147 58.5
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-29 133.7 174 48.9
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.4e-29 132.9 178 49.4
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 9.3e-29 131.0 180 47.2
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.3e-29 131.0 173 48.6
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 1.6e-28 130.2 185 49.2
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.6e-28 130.2 176 49.4
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.7e-28 129.4 169 49.7
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.8e-27 126.7 167 49.7
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.0e-27 125.9 178 49.4
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 2.5e-26 122.9 192 44.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 4.3e-26 122.1 187 43.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.8e-25 119.4 198 42.9
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 8.1e-25 117.9 185 49.2
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.8e-24 116.7 194 43.8
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 3.1e-24 115.9 180 47.2
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 5.3e-24 115.2 181 48.6
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.6e-23 112.8 188 43.6
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 2.6e-23 112.8 192 42.7
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 7.6e-23 111.3 188 44.1
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.5e-21 105.1 149 47.7
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 9.3e-21 104.4 180 43.3
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.6e-20 103.6 189 42.3
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 2.1e-20 103.2 179 45.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.5e-20 102.4 189 45.0
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.5e-20 102.4 184 44.6
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 6.0e-20 101.7 183 43.2
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 6.0e-20 101.7 201 41.3
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 6.0e-20 101.7 191 44.0
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.0e-19 100.9 205 41.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 2.3e-19 99.8 185 43.8
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 3.0e-19 99.4 195 40.0
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 3.0e-19 99.4 195 40.0
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.9e-19 99.0 182 42.9
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 5.1e-19 98.6 140 47.1
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 6.7e-19 98.2 190 42.6
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 6.7e-19 98.2 190 42.6
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 8.7e-19 97.8 184 40.8
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.5e-18 97.1 194 43.8
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-18 97.1 193 42.0
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-18 97.1 193 42.0
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.5e-18 97.1 193 42.0
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.5e-18 97.1 183 43.7
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.5e-18 97.1 194 39.7
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.9e-18 96.7 185 43.2
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.5e-18 96.3 190 43.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-18 95.5 195 40.0
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.7e-18 95.1 192 43.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 7.4e-18 94.7 203 42.4
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 7.4e-18 94.7 185 41.6
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.6e-18 94.4 195 39.5
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.3e-17 94.0 201 39.8
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.6e-17 93.6 159 42.8
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-17 93.2 198 41.4
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.1e-17 93.2 172 40.7
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.7e-17 92.4 196 41.3
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.8e-17 92.0 159 41.5
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 4.8e-17 92.0 197 40.6
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.8e-17 92.0 183 40.4
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.8e-17 92.0 196 38.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.8e-17 92.0 189 41.3
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 6.2e-17 91.7 186 39.8
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 6.2e-17 91.7 186 39.8
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 6.2e-17 91.7 136 47.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 8.2e-17 91.3 188 40.4
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 8.2e-17 91.3 133 47.4
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-16 90.9 193 38.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-16 90.9 193 38.9
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-16 90.1 188 38.3
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-16 89.7 198 38.4
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-16 89.7 198 38.4
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-16 89.7 198 38.4
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-16 89.7 198 38.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.4e-16 89.7 193 39.4
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 5.3e-16 88.6 184 39.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 5.3e-16 88.6 184 39.1
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 5.3e-16 88.6 142 45.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 5.3e-16 88.6 187 39.0
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 5.3e-16 88.6 193 39.4
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.9e-16 88.2 193 38.3
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.9e-16 88.2 193 38.3
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 9.0e-16 87.8 157 42.0
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.2e-15 87.4 152 39.5
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-15 87.0 200 38.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 2.0e-15 86.7 188 41.5
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.0e-15 86.7 188 38.8
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.4e-15 85.9 188 41.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.4e-15 85.9 193 42.5
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 4.5e-15 85.5 170 45.3
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.5e-15 85.5 185 40.0
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 4.5e-15 85.5 186 38.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 4.5e-15 85.5 181 40.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 7.6e-15 84.7 129 41.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-14 84.3 184 38.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.0e-14 84.3 182 40.1
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-14 84.0 189 34.4
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.3e-14 84.0 186 38.2
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.7e-14 83.6 187 41.2
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.7e-14 83.6 195 38.5
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 5.0e-14 82.0 167 40.7
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.0e-14 82.0 193 43.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.9e-13 80.1 81 55.6
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 3.2e-13 79.3 200 37.5
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 5.5e-13 78.6 196 37.8
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.6e-12 77.0 82 51.2
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.1e-12 76.6 124 46.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.7e-12 76.3 139 41.0
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.5e-12 75.9 139 41.7
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 4.6e-12 75.5 177 37.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 4.6e-12 75.5 182 39.6
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 6.1e-12 75.1 162 33.3
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.5e-10 70.5 148 36.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.3e-10 69.3 74 54.1
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.3e-09 67.4 185 35.1
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 6.9e-08 61.6 141 36.9
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.6e-07 59.7 190 31.6
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.0e-06 57.8 73 49.3


User provided reference genes

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