Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.3e-121 438.3 212 100.0
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 5.1e-98 361.3 173 100.0
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.8e-58 229.9 115 95.7
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.9e-57 226.5 129 84.5
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.4e-42 177.2 111 74.8
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.8e-42 176.8 139 59.7
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.8e-42 176.8 139 59.7
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.1e-39 166.0 148 52.7
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.1e-39 166.0 148 52.7
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 3.1e-39 166.0 129 57.4
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.6e-38 163.7 148 52.0
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.6e-38 163.7 148 52.0
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 1.0e-37 161.0 126 60.3
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 2.2e-37 159.8 125 56.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 3.8e-37 159.1 126 57.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.8e-37 159.1 124 60.5
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 6.7e-34 148.3 129 53.5
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 4.4e-33 145.6 126 51.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 1.3e-32 144.1 148 49.3
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 8.2e-32 141.4 129 49.6
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.1e-31 141.0 130 49.2
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 4.1e-31 139.0 130 49.2
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 5.3e-31 138.7 122 51.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 3.5e-30 136.0 126 51.6
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.9e-29 132.9 129 47.3
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 3.8e-29 132.5 129 46.5
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 6.5e-29 131.7 105 55.2
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 6.5e-29 131.7 114 50.0
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.5e-28 130.6 111 50.5
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 5.5e-28 128.6 107 52.3
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 5.5e-28 128.6 128 50.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 9.4e-28 127.9 115 52.2
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.6e-27 125.9 117 48.7
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.0e-26 124.4 119 48.7
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 3.0e-26 122.9 130 47.7
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 6.8e-26 121.7 122 43.4
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.2e-25 120.9 118 46.6
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.0e-25 120.2 89 58.4
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 2.8e-24 116.3 99 51.5
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 4.8e-24 115.5 110 50.0
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.1e-23 114.4 132 46.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 3.1e-23 112.8 98 50.0
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 9.1e-23 111.3 121 41.3
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.6e-22 110.5 110 47.3
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 2.7e-22 109.8 85 58.8
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.0e-21 107.8 124 43.5
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 2.2e-21 106.7 117 43.6
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 2.9e-21 106.3 160 35.0
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 6.5e-21 105.1 102 49.0
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.1e-20 104.4 103 47.6
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 5.5e-20 102.1 122 41.8
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.6e-19 100.5 86 51.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.4e-17 92.4 86 53.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.7e-17 92.0 77 53.2
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.7e-16 90.5 83 47.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.8e-16 89.7 105 36.2
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 6.3e-16 88.6 63 60.3
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 4.1e-15 85.9 111 34.2
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 9.2e-15 84.7 111 38.7
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 9.2e-15 84.7 45 88.9
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 1.2e-14 84.3 81 45.7
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.0e-13 81.3 107 33.6
Gorai.013G105500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.0e-13 81.3 40 97.5
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.0e-13 81.3 85 47.1
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.3e-13 80.9 111 35.1
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 3.3e-12 76.3 77 40.3
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.4e-10 70.9 68 51.5
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.8e-10 70.5 77 36.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 3.0e-10 69.7 66 48.5
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 4.0e-10 69.3 70 51.4
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 3.4e-09 66.2 58 46.6
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 4.4e-09 65.9 90 35.6
arahy.Tifrunner.gnm1.ann1.6PM9V5 Arachis hypogaea HOM05D006556 ORTHO05D009235 5.9e-06 55.5 52 53.8


User provided reference genes

Program Settings