Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 3038.4 1584 100.0
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 3026.9 1584 99.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 2905.9 1585 96.2
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 2145.5 1606 75.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 2136.3 1573 75.5
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 2097.0 1598 73.3
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 2031.5 1615 71.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1956.8 1597 69.6
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1514.6 1666 57.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1305.4 1627 52.9
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1288.5 1632 52.9
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1288.1 1691 50.1
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1270.4 1704 49.6
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1268.4 1628 51.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 1255.4 1620 51.0
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1245.0 1614 51.2
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1240.7 1613 51.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1226.8 1627 50.3
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1222.6 1596 50.5
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 0.0e+00 1181.0 1634 48.9
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 0.0e+00 1178.3 1625 49.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1176.4 1660 48.9
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1174.5 1634 49.7
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1169.8 1615 49.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1169.5 1626 50.0
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1158.7 1660 48.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1156.7 1622 48.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1151.3 1667 47.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 0.0e+00 1146.3 1421 53.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1127.9 1614 48.1
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1126.3 1630 47.8
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 1120.5 1622 48.5
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1116.3 1620 47.7
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1105.1 1623 47.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1091.3 1622 47.2
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.4e-309 1066.2 1628 46.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.0e-303 1046.6 1631 46.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.5e-300 1036.9 1618 45.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.4e-296 1023.8 1636 46.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 6.7e-296 1021.5 1649 45.0
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 5.2e-288 995.3 1654 44.4
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.2e-287 994.2 1609 45.4
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 9.7e-287 991.1 1644 46.2
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.1e-285 987.6 1630 45.0
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.1e-285 985.7 1537 45.2
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.7e-284 981.5 1665 44.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.5e-282 977.2 1621 45.1
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 3.0e-280 969.5 1616 45.1
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.2e-274 949.1 1619 44.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 6.3e-270 935.3 1630 44.5
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 4.1e-269 932.6 1624 44.5
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.6e-267 925.2 1627 44.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.0e-263 913.7 1667 42.3
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.8e-263 911.4 1633 43.1
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 2.0e-260 903.7 1621 42.8
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.5e-260 902.9 1621 44.0
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 2.5e-258 896.7 1618 43.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.5e-258 896.7 1617 43.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.6e-258 895.6 1620 42.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.5e-255 887.5 1623 42.7
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 9.2e-253 878.2 1613 42.8
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.7e-252 876.7 1391 45.7
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 9.5e-250 868.2 1654 41.7
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.7e-246 856.3 1613 42.3
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.1e-244 850.5 1658 41.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.0e-243 848.2 1658 40.8
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.1e-242 844.7 1636 41.9
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 2.5e-242 843.6 1633 41.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 6.4e-238 828.9 1684 40.4
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.4e-237 827.0 1607 41.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.3e-234 815.5 1607 40.6
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.9e-227 793.1 1601 40.7
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.0e-223 780.8 1653 40.8
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.0e-223 780.8 1642 39.6
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 7.6e-223 778.9 1642 39.6
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.1e-216 758.4 1606 40.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.6e-215 753.8 1315 43.0
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.9e-213 747.7 1670 38.7
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 7.1e-213 745.7 1638 39.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-211 741.9 1748 38.4
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.3e-210 736.5 1611 39.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 9.6e-210 735.3 1614 39.3
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 2.1e-209 734.2 1589 39.3
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.0e-206 723.0 1606 38.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 5.5e-205 719.5 1599 38.0
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.9e-202 711.1 1616 38.3
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.6e-201 708.0 1615 37.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 8.2e-201 705.7 1639 37.7
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.9e-200 702.6 1644 36.9
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.0e-199 701.0 1606 38.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.0e-198 698.7 1605 38.0
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.1e-192 677.2 1605 36.8
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.2e-191 675.2 1634 37.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.5e-191 674.9 1602 38.5
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 2.2e-190 671.0 1618 37.0
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 3.2e-189 667.2 1612 37.7
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.6e-186 657.5 1622 36.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 3.7e-185 653.7 1621 36.5
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 3.1e-184 650.6 1668 37.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.1e-184 649.0 1220 40.6
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 7.7e-183 646.0 1600 36.4
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-182 645.2 1601 36.4
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.6e-180 638.3 1747 36.2
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.0e-179 633.6 1741 35.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.1e-172 611.3 1207 41.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 6.8e-171 606.3 1611 35.7
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 8.8e-171 605.9 1590 35.0
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 3.5e-167 594.0 1623 35.6
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.5e-167 593.6 1618 35.7
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.9e-166 590.9 1611 35.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 8.5e-166 589.3 1618 35.5
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 6.8e-163 579.7 1392 36.9
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 3.4e-162 577.4 782 47.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 3.5e-159 567.4 1648 35.4
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.5e-149 535.4 1623 34.8
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 7.0e-144 516.5 1598 33.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-141 509.2 984 40.5
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 4.3e-141 507.3 1427 35.7
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.9e-139 499.6 1491 34.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.6e-135 487.3 599 52.6
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 6.2e-132 476.9 1610 32.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.4e-130 471.1 1691 32.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.1e-124 451.8 1627 32.6
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-105 388.7 709 43.0
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.3e-102 379.4 338 65.4
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 5.3e-75 287.7 1662 28.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.2e-73 282.3 482 42.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 4.7e-71 274.6 193 81.9
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.0e-69 269.2 203 74.9
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 9.7e-69 266.9 1480 29.9
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.4e-67 263.1 1601 27.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-64 253.1 1280 28.5
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 4.4e-61 241.5 837 32.1
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.8e-60 238.8 479 38.8
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.2e-57 229.2 1524 27.4
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.7e-55 221.5 202 63.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 9.8e-53 213.8 1583 27.3
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.5e-50 204.9 354 41.5
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.5e-48 198.0 212 59.4
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 7.2e-48 197.6 1530 26.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-43 183.3 1295 26.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-29 136.7 187 48.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.4e-28 131.3 88 79.5
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.6e-26 126.7 1363 25.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.7e-23 115.2 151 49.0
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 6.2e-23 114.8 495 31.5
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.8e-22 113.2 183 48.1
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-19 104.0 184 46.2
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-18 99.8 235 40.0
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.6e-17 94.4 288 33.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.1e-16 94.0 212 42.9
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.9e-16 93.2 529 30.2
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.4e-14 87.0 159 41.5
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.2e-12 79.7 1355 25.2
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.9e-12 78.6 190 37.9
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 5.6e-08 65.1 173 37.0
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 1.4e-06 60.5 142 42.3


User provided reference genes

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