Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.8e-38 161.0 80 100.0
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-37 159.5 80 98.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.5e-36 154.5 80 96.2
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-36 153.7 78 96.2
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-35 152.5 80 95.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-35 152.1 78 96.2
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-35 152.1 78 96.2
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-35 152.1 78 94.9
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-35 151.4 78 94.9
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.7e-34 147.1 78 93.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-33 146.0 80 91.2
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.1e-32 141.0 74 93.2
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-32 139.8 78 88.5
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.6e-31 138.3 78 87.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.8e-30 134.4 69 94.2
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.0e-30 134.0 78 84.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 9.4e-29 129.8 78 79.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.6e-28 127.5 78 78.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.5e-26 121.7 78 74.4
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.3e-25 119.4 78 71.8
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.7e-25 119.0 78 71.8
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.2e-25 118.6 78 71.8
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 4.8e-25 117.5 78 70.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.3e-25 117.1 78 70.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 6.3e-25 117.1 77 71.4
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 6.3e-25 117.1 78 71.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.2e-25 116.7 78 70.5
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.8e-24 115.5 78 70.5
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.4e-24 115.2 78 70.5
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-24 114.8 78 70.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.1e-24 114.8 72 75.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.3e-24 114.0 78 70.5
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 5.3e-24 114.0 78 69.2
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.9e-24 113.6 78 71.8
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 6.9e-24 113.6 78 69.2
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 6.9e-24 113.6 78 67.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 9.1e-24 113.2 77 66.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 9.1e-24 113.2 77 66.2
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.1e-24 113.2 92 69.6
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 9.1e-24 113.2 78 67.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 9.1e-24 113.2 78 69.2
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 9.1e-24 113.2 78 66.7
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.2e-23 112.8 78 67.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.5e-23 112.5 77 66.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.5e-23 112.5 72 72.2
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.5e-23 112.5 78 65.4
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.0e-23 112.1 78 66.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-23 112.1 75 69.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.6e-23 111.7 78 65.4
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.6e-23 111.7 72 69.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.6e-23 111.7 78 66.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.6e-23 111.7 77 67.5
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 3.4e-23 111.3 78 69.2
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.4e-23 111.3 77 64.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.4e-23 111.3 78 67.9
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 5.9e-23 110.5 78 65.4
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 7.7e-23 110.2 78 69.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.0e-22 109.8 77 63.6
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.0e-22 109.8 72 70.8
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-22 109.4 78 65.4
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.3e-22 109.4 79 68.4
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.7e-22 109.0 79 67.1
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.7e-22 109.0 77 63.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.2e-22 108.6 72 69.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.8e-22 107.8 72 72.2
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.8e-22 107.8 79 67.1
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.8e-22 107.8 79 67.1
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 3.8e-22 107.8 74 70.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 8.5e-22 106.7 78 64.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-21 105.5 80 71.2
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-21 105.1 78 67.9
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-21 105.1 78 67.9
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-21 105.1 78 67.9
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.5e-21 105.1 78 67.9
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.5e-21 105.1 78 66.7
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 3.2e-21 104.8 78 64.1
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.2e-21 104.4 78 62.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.2e-21 104.4 78 64.1
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 4.2e-21 104.4 78 65.4
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 4.2e-21 104.4 77 61.0
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 4.2e-21 104.4 72 65.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 7.2e-21 103.6 78 64.1
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 9.4e-21 103.2 70 68.6
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 9.4e-21 103.2 80 70.0
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 9.4e-21 103.2 80 70.0
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.6e-20 102.4 77 58.4
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.1e-20 102.1 78 60.3
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.7e-20 101.7 77 61.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-20 101.3 56 91.1
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.7e-20 100.9 78 62.8
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 4.7e-20 100.9 72 63.9
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 4.7e-20 100.9 78 60.3
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 6.1e-20 100.5 78 61.5
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.1e-20 100.5 78 65.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.1e-20 100.5 78 65.4
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.1e-20 100.5 79 63.3
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 7.9e-20 100.1 78 60.3
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 7.9e-20 100.1 77 57.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.4e-19 99.4 72 63.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.8e-19 99.0 78 57.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.8e-19 99.0 82 59.8
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.3e-19 98.6 78 57.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.3e-19 98.6 88 59.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.3e-19 98.6 78 61.5
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.0e-19 98.2 73 67.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.0e-19 98.2 73 67.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.9e-19 97.8 72 59.7
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.9e-19 97.8 78 60.3
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.1e-19 97.4 67 70.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.7e-19 97.1 78 56.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 6.7e-19 97.1 71 70.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.1e-18 96.3 72 63.9
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.6e-18 95.1 77 64.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.4e-18 94.4 77 57.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.4e-18 94.4 77 57.1
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 5.7e-18 94.0 79 58.2
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 9.7e-18 93.2 69 63.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 9.7e-18 93.2 69 63.8
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.7e-18 93.2 67 64.2
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 3.7e-17 91.3 73 60.3
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 6.3e-17 90.5 66 63.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.4e-16 89.4 66 63.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.1e-16 88.2 71 60.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-15 85.5 64 62.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.0e-15 85.5 72 56.9
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 5.0e-14 80.9 62 62.9
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.5e-14 80.5 67 64.2
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-13 78.2 42 92.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 7.2e-13 77.0 81 50.6
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.4e-13 76.6 77 57.1
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-12 76.3 57 66.7
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.1e-12 75.5 80 55.0
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.1e-12 75.5 80 55.0
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 2.1e-12 75.5 80 55.0
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.6e-12 74.7 35 94.3
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.7e-12 74.3 35 94.3
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.1e-12 73.9 80 53.8
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.1e-12 73.9 35 94.3
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.1e-12 73.9 80 53.8
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.0e-11 73.2 71 56.3
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.4e-11 72.8 80 53.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-11 72.4 40 82.5
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-11 72.4 40 82.5
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.3e-11 72.0 80 53.8
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 5.2e-11 70.9 74 54.1
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.5e-10 69.3 78 48.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 3.3e-10 68.2 52 63.5
Gohir.D04G103400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.7e-10 66.6 80 52.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.3e-09 63.9 59 50.8
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.6e-07 59.3 73 42.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-07 59.3 42 69.0
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-07 58.5 42 66.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.7e-07 58.5 35 68.6
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.7e-07 58.5 39 71.8
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.7e-07 57.0 48 58.3
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-06 56.6 35 68.6
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 2.2e-06 55.5 42 59.5
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.5e-06 53.9 67 46.3


User provided reference genes

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