Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 0.0e+00 1764.2 967 100.0
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 0.0e+00 1725.3 967 97.8
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 0.0e+00 1563.9 934 93.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 4.7e-276 954.9 1060 56.5
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.6e-247 858.6 1023 56.1
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.8e-183 646.7 1003 47.0
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.8e-165 585.1 996 44.2
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.9e-164 582.8 996 43.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.0e-158 563.1 612 57.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-158 563.1 996 42.9
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 7.3e-152 542.3 1005 42.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-140 505.0 994 40.8
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.9e-132 477.2 996 40.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.7e-98 364.4 1073 33.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 5.9e-85 320.1 1106 29.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.5e-75 288.1 1172 29.6
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.7e-71 275.4 1048 33.2
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.7e-71 275.4 344 53.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.7e-69 268.1 1014 29.9
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.7e-68 265.4 1040 30.2
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.0e-65 254.6 1035 28.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.2e-61 242.7 1064 29.6
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.7e-61 241.5 1188 28.7
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 5.6e-59 233.8 1029 29.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.1e-57 228.0 1029 29.3
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 3.1e-57 228.0 1197 27.2
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.2e-56 226.1 1057 28.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.4e-55 220.3 1050 29.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.2e-53 216.1 973 30.1
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.5e-53 214.5 1031 29.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.5e-51 209.1 957 28.5
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.6e-50 205.7 413 40.7
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 4.7e-50 204.1 1058 28.2
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.4e-49 202.6 911 29.4
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.8e-49 202.2 937 29.7
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.4e-48 198.0 1012 29.2
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.2e-47 195.3 480 38.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.4e-46 192.6 257 48.6
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.4e-46 191.8 1175 26.8
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.2e-46 191.4 1179 26.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 7.1e-46 190.3 717 30.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.6e-45 189.1 391 38.6
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 5.1e-44 184.1 1013 27.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.1e-43 183.0 497 36.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.5e-43 179.9 379 40.6
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 2.1e-42 178.7 1066 27.1
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.6e-42 177.9 485 35.5
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.2e-42 177.2 282 46.8
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.1e-41 176.4 416 35.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.3e-39 169.5 1048 26.8
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 8.4e-39 166.8 801 27.1
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 8.4e-39 166.8 410 38.0
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-38 166.4 1163 26.4
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.4e-38 166.0 396 36.9
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.4e-38 166.0 993 26.6
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 7.1e-38 163.7 1019 26.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.6e-37 162.5 711 29.0
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 6.0e-37 160.6 1042 26.3
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.7e-36 159.1 1005 26.4
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 6.6e-36 157.1 233 45.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-35 156.4 1229 24.8
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.9e-35 155.6 1086 25.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 9.6e-35 153.3 955 26.6
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 9.6e-35 153.3 1057 26.4
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.6e-34 151.4 1066 26.2
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.1e-33 148.3 935 24.6
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 3.1e-33 148.3 439 33.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.0e-32 145.6 1016 26.0
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.4e-30 139.4 171 50.9
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.4e-30 139.4 795 26.3
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 2.4e-30 138.7 905 27.1
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.2e-30 138.3 997 25.5
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.6e-29 134.4 465 30.5
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 6.0e-29 134.0 970 25.5
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 6.0e-29 134.0 465 30.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 7.8e-29 133.7 978 24.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.9e-28 131.3 219 42.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 6.6e-28 130.6 226 41.2
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 2.5e-27 128.6 837 26.5
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.6e-26 125.9 246 36.6
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.8e-26 125.2 1040 24.8
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 4.8e-26 124.4 246 35.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 4.8e-26 124.4 373 33.5
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.4e-25 122.1 779 26.3
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.3e-25 120.9 223 40.8
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 6.9e-25 120.6 256 37.5
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-23 115.9 224 38.8
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 3.8e-23 114.8 232 37.5
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 8.4e-23 113.6 222 40.1
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.4e-22 112.1 268 36.6
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 7.1e-22 110.5 713 25.4
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.6e-21 107.8 232 36.6
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.0e-20 106.7 403 30.3
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.9e-19 102.4 854 25.3
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.8e-18 98.6 117 47.9
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 6.2e-18 97.4 287 31.4
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 8.1e-18 97.1 236 34.3
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.6e-16 92.0 1003 23.2
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 3.8e-15 88.2 245 33.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 6.4e-15 87.4 132 43.9
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.1e-14 84.0 236 32.6
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 9.3e-14 83.6 334 30.2
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 3.0e-12 78.6 377 29.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.9e-11 75.9 275 32.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.3e-11 75.1 127 39.4
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 5.6e-11 74.3 56 58.9
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.1e-10 72.4 121 40.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 4.0e-09 68.2 130 40.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.3e-09 67.8 114 42.1
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.3e-09 67.8 114 42.1
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.3e-09 67.8 145 37.2
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-09 67.8 480 26.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.8e-08 64.3 152 34.9
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 5.8e-08 64.3 149 33.6
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-07 63.5 66 56.1
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.2e-07 62.4 302 28.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.8e-07 61.6 119 38.7
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 3.8e-07 61.6 186 29.6
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 4.9e-07 61.2 129 38.8
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 4.9e-07 61.2 382 27.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.1e-06 60.1 433 25.6
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.5e-06 58.9 313 25.9
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 9.3e-06 57.0 129 37.2


User provided reference genes

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