Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.4e-119 431.8 233 100.0
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-99 366.3 210 91.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-99 366.3 210 91.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 8.4e-78 294.3 210 74.3
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.2e-76 290.4 210 73.3
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.9e-67 258.8 128 97.7
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.2e-57 224.9 211 60.2
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 4.9e-54 215.3 213 59.6
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 6.4e-54 214.9 211 59.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-53 213.8 205 58.0
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.4e-53 213.8 208 59.6
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.2e-53 212.6 220 57.3
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.6e-52 208.8 220 56.8
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.6e-52 208.8 211 58.8
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.3e-51 207.2 212 57.5
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.0e-51 206.1 210 54.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.5e-50 203.8 208 58.2
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.6e-50 201.1 192 63.0
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.6e-49 200.3 226 52.7
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.1e-48 197.6 204 52.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.0e-48 195.7 224 52.2
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.0e-47 193.4 216 54.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 4.5e-47 192.2 211 55.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.8e-47 191.8 203 53.2
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 7.6e-47 191.4 212 53.3
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.2e-45 186.0 218 50.0
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 7.1e-45 184.9 229 52.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.6e-44 182.2 211 54.0
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 7.9e-44 181.4 198 53.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 3.9e-43 179.1 208 49.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 9.7e-42 174.5 176 52.3
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 1.4e-40 170.6 159 64.2
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.8e-40 170.2 208 53.4
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 4.1e-40 169.1 138 65.9
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 5.3e-40 168.7 206 50.5
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.3e-40 168.7 275 43.6
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.9e-40 168.3 195 53.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.4e-39 166.0 222 46.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.9e-38 162.9 223 46.2
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.9e-38 162.9 292 41.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.0e-38 162.2 202 49.5
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.5e-38 161.8 203 47.8
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.9e-37 160.2 225 44.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.5e-37 159.8 199 48.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 3.2e-37 159.5 148 55.4
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.2e-37 159.1 136 59.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.5e-37 158.7 200 44.5
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.2e-36 157.5 147 55.8
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.6e-36 157.1 211 46.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.7e-36 156.4 149 56.4
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 3.6e-36 156.0 149 56.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 6.1e-36 155.2 213 47.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 7.9e-36 154.8 163 53.4
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.0e-35 154.5 196 51.0
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.3e-35 154.1 116 70.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-35 153.7 166 52.4
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.8e-35 153.7 145 54.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-35 153.7 186 53.2
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.8e-35 153.7 201 46.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.0e-35 152.9 168 54.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 3.9e-35 152.5 148 54.1
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.7e-35 151.8 158 52.5
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.5e-34 150.6 145 55.9
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.3e-34 149.1 206 47.1
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.7e-33 147.1 168 50.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.7e-33 146.0 134 59.0
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-32 144.4 150 54.7
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 3.1e-32 142.9 156 52.6
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.6e-31 139.8 147 53.7
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 7.2e-29 131.7 162 46.9
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.1e-28 128.6 127 55.1
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 7.9e-28 128.3 151 47.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-27 126.7 154 53.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 3.0e-27 126.3 96 70.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 5.7e-26 122.1 145 47.6
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.4e-26 121.7 147 46.9
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 2.2e-25 120.2 130 50.0
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.5e-23 114.0 129 48.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.0e-22 111.3 130 48.5
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.4e-21 107.5 125 47.2
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.2e-21 105.9 125 46.4
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 4.7e-20 102.4 117 52.1
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.3e-18 96.3 73 68.5
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 7.4e-18 95.1 176 34.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.3e-17 94.4 144 37.5
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.3e-17 94.4 118 41.5
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-17 94.4 145 37.9
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.3e-17 94.4 152 34.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.7e-17 94.0 116 39.7
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.2e-17 93.6 163 34.4
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 4.8e-17 92.4 121 38.8
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.8e-17 92.4 168 31.0
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.4e-16 90.9 122 37.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.4e-16 90.1 145 33.8
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 2.4e-16 90.1 183 28.4
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.1e-16 89.4 196 29.1
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 5.3e-16 89.0 162 32.1
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 5.3e-16 89.0 123 36.6
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.3e-16 89.0 123 37.4
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.0e-16 88.6 125 36.0
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.2e-15 87.8 123 34.1
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.2e-15 87.8 192 28.1
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.6e-15 87.4 160 29.4
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.6e-15 87.4 121 37.2
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.0e-15 87.0 154 33.8
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.0e-15 87.0 123 33.3
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 2.6e-15 86.7 123 35.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 3.5e-15 86.3 198 29.8
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.5e-15 85.9 161 31.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 5.9e-15 85.5 118 35.6
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 7.7e-15 85.1 124 36.3
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.0e-14 84.7 143 28.0
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.0e-14 84.7 121 35.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.0e-14 84.7 112 40.2
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.0e-14 84.7 122 37.7
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.7e-14 84.0 122 36.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.7e-14 84.0 152 33.6
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.9e-14 83.2 162 35.2
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.9e-14 83.2 117 34.2
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.9e-14 83.2 124 35.5
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 5.0e-14 82.4 118 38.1
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.0e-14 82.4 124 34.7
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 6.5e-14 82.0 124 34.7
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 8.5e-14 81.6 118 36.4
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 8.5e-14 81.6 118 38.1
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.5e-13 80.9 123 34.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 4.2e-13 79.3 77 58.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 5.5e-13 79.0 117 36.8
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 5.5e-13 79.0 124 33.9
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.2e-13 78.6 118 33.9
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.2e-12 77.8 119 36.1
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.6e-12 77.4 118 33.1
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.1e-12 77.0 186 28.5
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 2.1e-12 77.0 147 36.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.6e-12 76.3 116 32.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.7e-12 75.9 186 29.6
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 6.1e-12 75.5 108 34.3
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 8.0e-12 75.1 68 57.4
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 1.0e-11 74.7 222 28.4
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.0e-11 74.7 119 31.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.4e-11 74.3 116 33.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.8e-11 73.9 119 31.9
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.8e-11 73.9 144 30.6
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.3e-11 73.6 175 26.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.3e-11 73.6 115 33.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 2.3e-11 73.6 146 30.8
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 4.0e-11 72.8 116 31.0
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.2e-11 72.4 134 36.6
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.7e-11 72.0 138 30.4
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 8.8e-11 71.6 128 34.4
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 4.8e-09 65.9 116 32.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 4.8e-09 65.9 173 26.6
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.4e-08 64.3 146 29.5
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.4e-08 63.5 80 37.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.1e-08 63.2 92 37.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.1e-08 63.2 130 30.0
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.3e-08 62.4 116 31.9
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-07 61.2 109 33.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.6e-07 60.8 79 35.4
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.7e-07 60.1 73 38.4
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 2.2e-06 57.0 162 27.8
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.2e-06 57.0 57 52.6
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 5.0e-06 55.8 36 77.8


User provided reference genes

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