Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.4e-34 147.9 82 100.0
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.2e-32 141.4 81 96.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.2e-32 141.4 81 96.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.2e-32 141.4 81 96.3
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.7e-31 138.3 81 95.1
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.5e-31 137.9 80 93.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-31 137.5 80 93.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.7e-30 135.6 81 92.6
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.3e-30 135.2 77 96.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.0e-30 134.8 81 92.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.0e-30 134.8 81 92.6
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 6.6e-30 133.7 81 91.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 8.7e-30 133.3 80 92.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.5e-29 132.5 81 90.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.5e-29 132.5 81 90.1
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.9e-29 132.1 81 88.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.9e-29 132.1 81 88.9
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.5e-29 131.7 76 94.7
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.5e-29 131.7 81 88.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.6e-29 130.6 81 88.9
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 9.6e-29 129.8 81 86.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 9.6e-29 129.8 81 87.7
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 9.6e-29 129.8 81 88.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 9.6e-29 129.8 81 88.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-28 129.4 81 87.7
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-28 129.4 81 87.7
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-28 129.4 81 87.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.3e-28 129.4 80 85.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.1e-28 128.6 80 85.0
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.8e-28 128.3 80 87.5
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.6e-28 127.9 81 86.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.6e-28 127.9 81 87.7
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 86.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 86.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 87.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 87.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 87.5
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 4.8e-28 127.5 81 87.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 4.8e-28 127.5 81 85.2
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.8e-28 127.5 81 85.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 6.2e-28 127.1 80 86.2
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 6.2e-28 127.1 80 86.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.1e-28 126.7 81 85.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.1e-28 126.7 80 86.2
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 8.1e-28 126.7 81 85.2
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.1e-28 126.7 81 85.2
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.1e-27 126.3 81 86.4
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.1e-27 126.3 80 86.2
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.1e-27 126.3 81 85.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.4e-27 125.9 81 86.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.4e-27 125.9 80 85.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.4e-27 125.9 81 84.0
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-27 125.9 81 82.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.8e-27 125.6 81 85.2
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.8e-27 125.6 79 87.3
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 86.2
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.4e-27 125.2 81 82.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 85.0
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.4e-27 125.2 80 86.2
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.1e-27 124.8 80 86.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.0e-27 124.4 80 83.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.0e-27 124.4 80 85.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.3e-27 124.0 80 85.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 5.3e-27 124.0 80 85.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.3e-27 124.0 80 83.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 5.3e-27 124.0 80 85.0
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.9e-27 123.6 81 81.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 6.9e-27 123.6 81 81.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 9.0e-27 123.2 80 83.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 9.0e-27 123.2 81 85.2
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 9.0e-27 123.2 81 82.7
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.0e-27 123.2 81 82.7
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 9.0e-27 123.2 81 82.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.5e-26 122.5 77 85.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.5e-26 122.5 77 85.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.0e-26 122.1 81 81.5
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.6e-26 121.7 80 81.2
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.6e-26 121.7 81 84.0
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.4e-26 121.3 80 82.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.5e-26 120.9 79 84.8
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.5e-26 120.9 80 83.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.8e-26 120.6 80 82.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 7.6e-26 120.2 81 81.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.6e-26 120.2 80 81.2
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 7.6e-26 120.2 80 82.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.7e-25 119.0 81 84.0
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.8e-25 117.9 81 79.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 3.8e-25 117.9 80 81.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 4.9e-25 117.5 81 80.2
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 4.9e-25 117.5 81 80.2
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.4e-25 116.7 81 79.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 8.4e-25 116.7 81 79.0
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.1e-24 116.3 77 80.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.1e-24 116.3 80 82.5
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.4e-24 115.2 81 79.0
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.4e-24 115.2 81 77.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-24 115.2 81 77.8
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.4e-24 115.2 81 76.5
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 5.4e-24 114.0 81 79.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 9.3e-24 113.2 76 81.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 9.3e-24 113.2 81 77.8
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-23 112.5 76 81.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-23 112.5 81 75.3
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.0e-22 109.8 69 82.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.0e-22 109.8 94 69.1
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.3e-22 109.4 68 83.8
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.9e-22 107.8 69 84.1
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.6e-21 103.2 80 68.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-19 99.8 81 69.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.8e-19 99.0 78 66.7
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.0e-18 95.5 79 60.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.8e-18 94.0 81 65.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.2e-17 92.0 78 61.5
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.9e-17 90.9 67 70.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 8.4e-17 90.1 81 69.1
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 8.4e-17 90.1 80 66.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 5.5e-16 87.4 78 62.8
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-15 85.9 55 85.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.1e-15 85.5 55 87.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.5e-15 84.7 56 83.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 6.0e-15 84.0 55 85.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.9e-15 83.6 57 78.9
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.0e-14 83.2 55 85.5
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.0e-14 83.2 69 68.1
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.9e-14 81.3 76 65.8
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 8.7e-14 80.1 81 64.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.9e-13 79.0 78 56.4
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.3e-13 78.2 76 63.2
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.3e-13 78.2 58 77.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 9.6e-13 76.6 59 74.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-12 75.5 55 76.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.0e-11 71.2 72 58.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-10 69.7 50 76.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.5e-10 69.3 68 67.6
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 5.8e-10 67.4 68 60.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.3e-06 56.2 38 81.6
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-06 53.5 56 58.9


User provided reference genes

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