Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G109700 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.1e-69 264.6 135 100.0
Gohir.D02G096000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.7e-67 259.2 135 97.0
Gohir.D10G213350 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.9e-67 258.5 135 96.3
Gohir.A08G185020 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.8e-67 258.1 135 97.8
Gorai.008G067700 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.0e-63 245.7 134 94.8
Gohir.D01G034401 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.6e-63 245.4 131 96.2
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.6e-57 226.1 116 97.4
Gohir.D04G169700 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-52 209.5 115 91.3
Gohir.D05G174300 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.6e-52 208.0 127 85.0
Gorai.012G158000 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.0e-51 206.8 118 88.1
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 3.3e-50 201.8 116 86.2
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 1.1e-48 196.8 116 83.6
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 5.2e-48 194.5 116 75.9
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 6.8e-48 194.1 116 81.9
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 8.9e-48 193.7 116 81.9
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 1.5e-47 193.0 116 76.7
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 2.0e-47 192.6 118 76.3
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 2.0e-47 192.6 116 77.6
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.4e-47 191.8 116 81.0
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 3.4e-47 191.8 115 79.1
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 4.4e-47 191.4 116 75.9
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 2.2e-46 189.1 115 77.4
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 2.2e-46 189.1 115 77.4
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 2.2e-46 189.1 115 76.5
Gohir.D07G104000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.4e-45 185.7 131 77.9
Gohir.D07G116100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.1e-45 184.9 95 98.9
Gohir.D10G155925 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.1e-45 184.9 95 98.9
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 5.4e-45 184.5 121 72.7
Psat6g169880 Pisum sativum HOM05D002930 ORTHO05D003283 7.1e-45 184.1 121 71.9
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 7.1e-45 184.1 120 73.3
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 9.2e-45 183.7 114 75.4
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 9.2e-45 183.7 121 72.7
Gorai.001G179200 Gossypium raimondii HOM05D002930 ORTHO05D003283 9.2e-45 183.7 95 97.9
CiPaw.07G095900 Carya illinoinensis HOM05D002930 ORTHO05D003283 1.2e-44 183.3 115 74.8
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 1.2e-44 183.3 115 75.7
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 1.2e-44 183.3 120 72.5
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 2.7e-44 182.2 121 71.1
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 2.7e-44 182.2 116 76.7
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 4.6e-44 181.4 116 74.1
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 7.8e-44 180.6 116 72.4
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.0e-43 180.3 125 74.4
Gohir.D04G075400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.3e-43 179.9 95 95.8
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 1.7e-43 179.5 116 72.4
Gohir.D01G193850 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.7e-43 179.5 98 93.9
Gohir.D11G258550 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.3e-43 179.1 95 94.7
Gorai.007G276800 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.3e-43 179.1 95 94.7
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 3.9e-43 178.3 115 74.8
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 3.9e-43 178.3 120 68.3
Gorai.013G151200 Gossypium raimondii HOM05D002930 ORTHO05D003283 5.1e-43 177.9 128 75.8
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 1.1e-42 176.8 121 70.2
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.5e-42 176.4 116 69.8
Gohir.A07G059600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.5e-42 175.6 92 95.7
Gohir.D06G133100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-41 172.9 95 94.7
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 2.1e-41 172.6 116 71.6
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 2.8e-41 172.2 116 70.7
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 3.6e-41 171.8 115 71.3
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 1.4e-40 169.9 126 67.5
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 2.3e-40 169.1 126 68.3
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 3.1e-40 168.7 116 68.1
MBI19_g21638_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 4.0e-40 168.3 121 66.9
Gohir.D13G110101 Gossypium hirsutum HOM05D002930 ORTHO05D003283 6.8e-40 167.5 116 66.4
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.5e-39 166.4 116 68.1
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.0e-39 166.0 116 65.5
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.6e-39 165.6 116 65.5
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 4.4e-39 164.9 116 69.0
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 4.4e-39 164.9 116 69.8
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 5.8e-39 164.5 116 68.1
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 7.6e-39 164.1 116 68.1
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 9.9e-39 163.7 116 68.1
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 9.9e-39 163.7 116 67.2
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 1.3e-38 163.3 116 66.4
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 1.3e-38 163.3 116 66.4
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 1.3e-38 163.3 113 68.1
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 1.7e-38 162.9 116 69.0
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 2.2e-38 162.5 116 67.2
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 2.2e-38 162.5 116 67.2
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 2.2e-38 162.5 116 66.4
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 8.4e-38 160.6 116 65.5
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 8.4e-38 160.6 116 64.7
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 8.4e-38 160.6 116 64.7
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.1e-37 160.2 116 64.7
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 1.1e-37 160.2 116 66.4
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 1.1e-37 160.2 116 63.8
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 1.1e-37 160.2 116 64.7
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 1.4e-37 159.8 116 64.7
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 1.9e-37 159.5 116 64.7
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 2.4e-37 159.1 113 66.4
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 3.2e-37 158.7 121 64.5
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 4.1e-37 158.3 116 63.8
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 7.1e-37 157.5 125 60.8
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 7.1e-37 157.5 116 67.2
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 9.2e-37 157.1 116 63.8
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 9.2e-37 157.1 116 63.8
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 9.2e-37 157.1 116 63.8
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 9.2e-37 157.1 116 63.8
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 9.2e-37 157.1 116 63.8
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 1.2e-36 156.8 116 62.9
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 1.2e-36 156.8 119 63.9
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.1e-36 156.0 116 62.1
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.1e-36 156.0 116 62.1
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 2.1e-36 156.0 116 64.7
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 2.1e-36 156.0 116 66.4
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 6.0e-36 154.5 115 65.2
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 1.0e-35 153.7 116 65.5
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 1.7e-35 152.9 116 65.5
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 2.3e-35 152.5 116 65.5
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 2.3e-35 152.5 125 60.0
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 3.0e-35 152.1 125 60.8
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 8.6e-35 150.6 125 60.0
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 8.6e-35 150.6 116 62.1
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 1.1e-34 150.2 116 62.1
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 1.5e-34 149.8 116 62.9
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 1.9e-34 149.4 116 62.9
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 3.3e-34 148.7 116 60.3
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 3.3e-34 148.7 116 59.5
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 4.3e-34 148.3 116 61.2
Gohir.D11G053151 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.6e-34 147.9 81 92.6
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 9.6e-34 147.1 116 60.3
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 9.6e-34 147.1 113 61.9
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 9.6e-34 147.1 116 66.4
Gohir.D02G064100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-33 146.7 74 97.3
SHI15440 Sapria himalayana HOM05D002930 ORTHO05D003283 1.2e-33 146.7 115 62.6
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 1.6e-33 146.4 116 61.2
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 6.2e-33 144.4 116 61.2
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 6.2e-33 144.4 116 60.3
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 8.1e-33 144.1 116 65.5
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 1.4e-32 143.3 125 57.6
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 1.4e-32 143.3 114 60.5
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 1.8e-32 142.9 121 58.7
DCAR_012455 Daucus carota HOM05D002930 ORTHO05D003283 6.9e-32 141.0 111 65.8
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 6.9e-32 141.0 116 58.6
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 6.9e-32 141.0 116 58.6
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 6.9e-32 141.0 121 57.9
CDE08G1131 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 8.9e-32 140.6 116 59.5
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 8.9e-32 140.6 116 57.8
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 1.5e-31 139.8 116 59.5
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 2.0e-31 139.4 116 59.5
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 2.0e-31 139.4 121 57.0
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 3.4e-31 138.7 112 59.8
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 1.9e-29 132.9 116 57.8
QL03p004191 Quercus lobata HOM05D002930 ORTHO05D003283 9.9e-23 110.5 100 57.0
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 2.4e-21 105.9 111 45.9
QL03p004772 Quercus lobata HOM05D002930 ORTHO05D003283 9.3e-21 104.0 100 54.0
Gorai.009G179600 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.5e-20 102.1 53 94.3
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 3.5e-20 102.1 108 46.3
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 4.6e-20 101.7 113 49.6
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 8.1e-17 90.9 108 41.7
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 1.2e-12 77.0 76 48.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.6e-12 76.6 108 36.1
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 5.1e-11 71.6 109 34.9
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 3.1e-08 62.4 36 77.8
CBR_g45308 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-06 56.2 115 31.3


User provided reference genes

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