Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 3.9e-49 198.0 111 100.0
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.5e-48 195.3 111 98.2
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 5.6e-48 194.1 111 98.2
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.6e-47 192.6 111 97.3
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.6e-47 192.6 111 97.3
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.2e-47 190.7 111 95.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.1e-46 189.9 111 96.4
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 6.9e-46 187.2 111 93.7
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 92.8
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 89.2
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 4.2e-43 177.9 111 89.2
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 87.4
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 87.4
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 3.5e-42 174.9 111 87.4
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 3.5e-42 174.9 111 86.5
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 4.6e-42 174.5 111 87.4
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 88.4
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 84.7
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 87.5
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 86.5
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 86.5
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 84.7
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 84.7
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 84.7
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.9e-40 169.1 108 88.0
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 83.8
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 83.8
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 4.3e-40 167.9 109 83.5
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 84.7
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 85.6
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 83.8
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 86.5
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 86.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 7.3e-40 167.2 110 84.5
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 7.3e-40 167.2 109 84.4
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 85.6
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 84.7
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 84.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 9.6e-40 166.8 110 84.5
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-39 166.4 108 86.1
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 84.7
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 83.8
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.6e-39 164.9 111 84.7
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 4.8e-39 164.5 111 83.8
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 8.1e-39 163.7 112 83.0
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 82.0
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 82.0
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.4e-38 162.9 109 82.6
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.8e-38 162.5 107 82.2
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.8e-38 162.5 112 83.9
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.4e-38 162.2 112 83.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 82.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 4.0e-38 161.4 127 76.4
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.0e-38 161.4 111 82.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 5.3e-38 161.0 111 82.0
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 5.3e-38 161.0 111 80.2
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 5.3e-38 161.0 111 82.0
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 111 81.1
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 111 81.1
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.5e-37 159.5 109 82.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.5e-37 159.5 107 82.2
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.5e-37 159.5 111 82.0
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 82.0
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 81.1
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.5e-37 157.9 111 79.3
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 7.6e-37 157.1 112 77.7
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 9.9e-37 156.8 111 82.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.3e-36 156.4 111 80.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.3e-36 156.4 109 79.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.3e-36 156.4 111 81.1
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 83.0
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 2.2e-36 155.6 109 79.8
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.2e-36 155.6 109 79.8
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.2e-36 155.6 109 79.8
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.2e-36 155.6 133 70.7
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 2.2e-36 155.6 104 83.7
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.2e-36 155.6 105 80.0
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.9e-36 155.2 112 78.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 3.8e-36 154.8 107 79.4
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 112 78.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 112 78.6
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 8.4e-36 153.7 111 79.3
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 8.4e-36 153.7 111 77.5
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 8.4e-36 153.7 107 78.5
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 8.4e-36 153.7 103 81.6
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.1e-35 153.3 107 78.5
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.4e-35 152.9 107 78.5
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.9e-35 152.5 107 80.4
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 2.4e-35 152.1 110 77.3
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.2e-35 151.8 112 79.5
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.2e-35 151.8 115 77.4
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 4.2e-35 151.4 105 79.0
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.2e-35 151.4 111 77.5
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 5.4e-35 151.0 107 80.4
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 9.3e-35 150.2 103 79.6
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.2e-34 149.8 99 85.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-34 149.8 114 77.2
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.2e-34 149.8 100 83.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.6e-34 149.4 110 75.5
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 75.7
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 2.1e-34 149.1 107 76.6
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 2.1e-34 149.1 107 76.6
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 2.1e-34 149.1 107 76.6
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 2.1e-34 149.1 107 76.6
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.7e-34 148.7 106 79.2
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.5e-34 148.3 107 76.6
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 76.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.0e-33 146.7 111 75.7
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.3e-33 146.4 107 75.7
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 77.7
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 2.5e-32 142.1 112 72.3
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.3e-32 141.7 97 78.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.4e-32 140.6 99 79.8
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 7.4e-32 140.6 111 72.1
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 9.6e-32 140.2 112 74.1
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 4.0e-30 134.8 97 72.2
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.2e-29 133.3 111 70.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.9e-28 128.6 111 69.4
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 4.9e-28 127.9 97 76.3
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 4.9e-28 127.9 98 71.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.1e-27 124.0 85 77.6
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.3e-27 123.6 111 68.5
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.6e-26 122.9 101 66.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 3.5e-26 121.7 182 48.9
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-25 119.8 68 98.5
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.5e-24 116.3 83 79.5
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 3.3e-24 115.2 104 66.3
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-22 109.8 107 60.7
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.8e-17 92.8 57 86.0
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 9.7e-16 87.0 50 92.0
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.6e-15 86.3 62 79.0
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 7.6e-13 77.4 59 72.9
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 1.3e-12 76.6 60 71.7
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.3e-12 76.6 56 75.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.7e-12 76.3 92 53.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 2.9e-12 75.5 62 71.0
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 3.2e-11 72.0 109 45.0
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 2.3e-09 65.9 52 75.0
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 8.2e-07 57.4 102 40.2


User provided reference genes

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