Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 2104.7 1049 100.0
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 2004.6 1033 96.4
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1714.9 1055 80.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1575.5 1048 74.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1347.4 1041 64.5
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1336.2 1034 62.6
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1325.5 1044 61.8
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1321.2 1071 61.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1318.1 1060 61.2
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1301.6 1051 61.5
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1299.6 1047 61.5
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1299.3 1064 60.9
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1280.0 1043 60.8
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1274.2 1054 60.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1254.2 1069 58.3
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1252.3 1073 58.1
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1240.7 1067 57.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1236.9 1049 57.9
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1236.1 1062 57.6
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1234.9 1067 57.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1228.4 1024 58.7
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1226.1 1057 57.2
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1226.1 1061 57.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1224.2 1040 57.6
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1224.2 1068 57.4
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1221.1 1068 57.0
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1221.1 1036 57.8
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1220.7 1030 59.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1220.3 1024 58.8
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1213.4 1041 57.1
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1204.1 1024 57.4
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1203.3 1098 56.1
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1200.7 1013 58.1
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1200.7 1013 58.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1199.9 1082 54.9
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1199.1 1040 57.3
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1198.7 1081 56.6
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1194.5 1075 55.5
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1193.3 1036 57.7
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1192.9 1036 57.2
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1190.3 1052 56.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1177.5 1049 55.9
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1176.4 1052 55.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1174.1 1043 55.6
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1173.7 1036 55.9
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1173.7 971 58.8
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1171.8 1064 55.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1167.9 1036 56.7
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1164.4 1126 52.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1163.3 1033 56.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1153.3 961 58.8
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1150.6 1062 54.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1146.3 962 58.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1135.6 1076 53.8
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1022 54.8
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1123.2 1048 53.1
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1111.3 1022 54.8
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1109.7 1004 53.9
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1107.8 1028 53.7
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 1044 54.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1102.4 1069 51.7
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1100.1 926 59.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1092.4 1029 52.5
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1088.6 1014 52.2
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1087.8 1078 50.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1083.6 1036 53.0
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1077.0 876 61.1
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 7.1e-310 1067.4 958 53.4
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.6e-307 1057.7 884 57.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.3e-305 1051.2 951 53.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 2.2e-303 1045.8 887 57.8
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 3.2e-302 1042.0 1052 51.1
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 8.7e-300 1033.9 1004 52.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.5e-299 1033.1 1045 50.0
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.3e-298 1030.0 1030 50.9
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 4.8e-290 1001.5 852 58.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.0e-284 982.2 1062 47.6
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 6.9e-281 971.1 1107 46.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.5e-275 953.4 770 60.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 4.8e-274 948.3 769 60.7
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.7e-271 939.9 909 53.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.4e-265 919.5 1061 44.9
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 2.3e-260 902.9 1033 46.6
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.7e-258 896.7 760 59.3
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.5e-254 882.9 692 62.3
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 4.2e-254 882.1 1034 46.5
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 9.7e-251 870.9 996 45.1
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 5.9e-248 861.7 882 50.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.5e-230 803.1 665 59.5
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 6.4e-226 788.5 496 78.4
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 3.0e-223 779.6 1035 41.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.0e-216 756.9 684 54.4
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 7.8e-216 755.0 1027 40.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.7e-205 719.2 551 63.3
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.6e-203 713.4 612 56.7
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 9.9e-203 711.4 733 49.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.3e-185 651.7 637 50.2
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 2.1e-160 570.9 598 48.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 3.4e-155 553.5 355 78.3
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 8.6e-122 442.6 218 99.1
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.6e-110 404.4 349 55.9
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.3e-105 387.5 390 51.8
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 5.8e-102 376.7 334 55.7
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 7.5e-102 376.3 193 100.0
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-87 328.9 1003 27.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-78 297.7 233 59.2
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 3.8e-77 294.3 319 47.6
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 4.2e-76 290.8 220 61.4
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.3e-64 252.7 245 53.9
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 2.7e-59 235.0 206 57.3
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.1e-56 225.3 359 38.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.1e-55 223.0 179 59.2
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.5e-54 217.6 179 58.1
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 5.8e-54 217.2 190 56.8
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.2e-53 215.3 179 57.5
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.9e-51 206.8 881 23.7
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.1e-43 182.2 130 63.8
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 3.0e-42 178.3 154 53.2
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.3e-40 172.9 698 25.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 7.7e-38 163.7 127 62.2
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.0e-37 163.3 548 28.3
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-37 162.9 996 22.5
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.6e-33 148.7 207 38.2
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 3.1e-31 141.7 116 56.9
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.7e-29 136.0 124 54.0
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.2e-28 131.7 116 51.7
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.2e-28 131.7 137 48.2
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.1e-27 127.5 722 23.1
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.8e-26 125.9 118 53.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.2e-26 124.4 135 48.9
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 7.7e-22 110.5 84 56.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.7e-21 109.4 84 54.8
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.5e-21 107.1 447 23.7
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.5e-20 106.3 266 28.9
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 4.2e-20 104.8 104 49.0
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 2.0e-17 95.9 84 53.6
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 5.7e-17 94.4 397 24.2
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.5e-17 94.0 352 27.3
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.1e-15 88.2 432 22.9
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.0e-13 83.6 77 55.8
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 2.9e-13 82.0 59 62.7
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 8.5e-13 80.5 59 61.0
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.9e-12 79.3 101 41.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.1e-11 75.9 242 25.6
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.6e-11 75.1 57 61.4
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.6e-09 68.9 78 51.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 9.8e-09 67.0 86 39.5
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 1.3e-08 66.6 55 52.7
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.7e-08 66.2 58 53.4
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 6.3e-08 64.3 52 55.8
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 4.1e-07 61.6 37 67.6
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 5.9e-06 57.8 33 69.7


User provided reference genes

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