Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1685.2 853 100.0
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1675.2 853 99.3
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1652.5 853 97.9
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1417.5 890 81.1
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1348.2 820 82.8
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1247.6 893 72.8
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1247.6 891 73.4
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1246.5 894 72.0
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1241.9 856 74.9
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1235.3 856 74.4
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1233.8 891 71.6
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1231.1 856 73.8
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1229.9 860 73.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1229.5 892 70.7
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1225.3 890 70.7
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1225.3 855 73.2
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1214.9 855 72.7
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1213.0 894 70.2
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1200.7 854 72.7
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1196.4 934 67.0
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1191.4 855 72.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1190.3 855 72.0
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1185.6 855 71.9
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1183.7 895 69.4
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1181.4 855 70.2
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1180.2 885 67.8
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1176.8 868 70.6
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1172.1 866 70.9
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1166.8 811 73.5
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1164.1 884 67.5
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1163.7 904 67.0
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1162.9 856 70.1
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1154.4 895 68.9
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1146.3 841 69.4
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1140.6 841 69.3
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1139.4 865 68.4
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1138.3 865 68.3
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1138.3 873 67.1
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 858 67.2
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 851 67.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1129.8 834 69.3
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1129.4 796 73.4
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1126.3 851 67.8
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1125.9 838 69.1
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1119.0 848 67.9
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1116.7 855 67.8
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1104.4 851 66.6
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1102.0 856 67.2
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1099.0 849 67.1
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1096.6 851 66.2
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1095.9 1008 59.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1094.7 855 67.1
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1092.4 845 66.0
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1089.3 830 66.3
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1085.9 803 70.5
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1083.9 857 65.5
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1082.4 851 66.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1078.2 923 63.5
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1076.6 847 66.0
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 8.8e-311 1070.1 855 64.8
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 3.7e-309 1064.7 919 62.1
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.1e-308 1061.2 812 68.3
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 4.6e-307 1057.7 849 64.5
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 7.8e-307 1057.0 817 66.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 3.9e-306 1054.7 824 66.3
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 3.3e-305 1051.6 828 64.7
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 1.8e-303 1045.8 855 64.2
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 7.5e-302 1040.4 861 63.2
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.1e-300 1036.6 831 65.8
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 5.4e-300 1034.2 851 63.2
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.6e-299 1032.7 837 63.4
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 9.9e-294 1013.4 861 62.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 5.4e-292 1007.7 836 63.6
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.7e-290 1002.7 826 63.6
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 5.8e-286 987.6 831 62.1
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 9.9e-286 986.9 809 63.4
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.9e-285 985.3 830 61.4
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.9e-284 982.6 833 61.6
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 2.1e-283 979.2 827 61.7
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 3.9e-282 974.9 828 61.5
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 5.6e-281 971.1 821 61.5
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 3.5e-275 951.8 823 61.0
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 3.5e-275 951.8 823 61.0
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 6.7e-274 947.6 832 61.1
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 8.1e-272 940.6 831 60.9
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.8e-271 939.5 833 60.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 2.1e-267 926.0 824 59.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.8e-266 922.9 816 59.2
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.9e-265 919.5 816 58.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 6.9e-263 911.0 836 58.1
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 5.8e-262 907.9 840 59.2
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 6.5e-261 904.4 725 64.8
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 8.8e-250 867.5 839 57.2
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.9e-242 842.0 761 58.6
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 4.4e-241 838.6 892 55.4
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.1e-227 793.1 763 59.2
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.7e-221 773.5 697 61.1
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.7e-195 685.6 490 72.7
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.1e-191 674.5 897 45.7
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.8e-190 668.3 888 45.0
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 6.8e-178 628.6 614 56.4
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.9e-178 628.2 400 77.0
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 3.4e-169 599.7 370 80.0
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.3e-164 582.0 831 43.0
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 3.0e-157 560.1 415 68.4
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.9e-141 506.5 409 65.3
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.9e-135 487.6 485 57.3
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.0e-129 467.6 481 56.3
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.7e-126 457.2 403 62.0
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.7e-107 393.7 273 71.1
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.3e-88 332.0 392 51.3
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.0e-85 320.5 175 86.9
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 4.6e-81 307.0 285 57.2
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-79 302.4 545 38.2
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-79 302.4 545 38.2
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.6e-76 291.2 826 29.8
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.4e-74 283.5 151 88.1
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.8e-73 279.6 375 45.9
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.4e-67 260.0 283 55.5
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.7e-64 251.9 137 86.1
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 6.6e-64 250.0 145 84.8
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.1e-58 229.9 137 79.6
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.4e-52 210.7 117 79.5
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.8e-52 210.3 452 32.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.9e-42 178.7 195 43.1
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.9e-34 152.1 188 50.0
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 4.1e-29 134.4 270 32.2
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.4e-26 125.9 129 50.4
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 4.6e-25 120.9 156 42.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 5.7e-23 114.0 98 59.2
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.7e-17 95.1 58 70.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 3.6e-17 94.7 129 41.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 9.7e-15 86.7 225 27.6
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.8e-14 85.1 81 56.8
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-13 83.2 118 40.7
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-13 80.5 55 70.9
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.1e-13 80.1 55 70.9
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 6.5e-11 73.9 60 56.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.9e-10 72.4 57 59.6
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 2.1e-09 68.9 33 84.8
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 2.8e-06 58.5 37 67.6


User provided reference genes

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