Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.3e-152 543.1 294 100.0
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.0e-149 531.9 294 97.3
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 7.2e-135 484.2 294 86.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.1e-132 476.9 294 86.4
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 5.3e-130 468.0 294 84.7
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.2e-112 409.5 297 75.8
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.6e-110 403.3 294 74.1
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.1e-110 402.9 294 74.5
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 4.7e-110 401.7 295 72.9
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.0e-108 396.4 297 75.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.6e-108 396.0 294 73.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.4e-108 395.6 293 74.1
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.8e-107 392.5 297 73.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 4.1e-106 388.7 296 73.3
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.4e-106 388.3 294 72.4
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 9.2e-106 387.5 228 93.4
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.2e-105 387.1 279 73.1
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 5.0e-104 381.7 296 73.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 6.6e-104 381.3 301 71.8
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.5e-103 380.2 295 69.8
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.5e-103 380.2 293 72.4
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.9e-103 379.8 294 72.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.6e-103 378.3 294 71.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 9.5e-103 377.5 295 71.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.5e-103 377.5 294 69.7
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 9.5e-103 377.5 294 72.4
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-102 377.1 294 71.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.6e-102 376.7 295 74.2
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.6e-102 376.7 294 71.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.8e-102 375.9 296 69.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.6e-102 375.6 294 71.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.6e-102 375.6 294 71.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 3.6e-102 375.6 294 70.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 4.7e-102 375.2 296 69.9
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.7e-102 375.2 295 71.5
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 8.0e-102 374.4 294 72.4
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.0e-101 374.0 296 72.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.3e-101 372.9 297 73.1
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.0e-101 372.5 294 72.4
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.0e-101 372.5 294 72.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 4.0e-101 372.1 296 69.3
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 5.2e-101 371.7 295 70.5
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.0e-100 369.8 295 71.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.7e-100 368.2 295 72.5
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.7e-100 368.2 295 72.5
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.7e-100 368.2 294 69.7
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.5e-100 367.9 259 78.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 9.8e-100 367.5 294 69.7
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.7e-99 366.7 295 72.2
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 8.3e-99 364.4 297 70.4
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.4e-98 363.6 296 68.9
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.4e-98 363.6 287 70.0
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 4.1e-98 362.1 299 69.2
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.2e-98 360.9 329 62.3
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.2e-97 360.5 295 70.2
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.2e-97 360.5 273 72.9
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.7e-97 359.4 293 71.3
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 4.6e-97 358.6 312 67.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.9e-97 358.2 297 67.0
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.0e-96 357.5 296 70.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.0e-96 357.5 302 67.5
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.0e-96 357.5 258 77.5
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 3.9e-96 355.5 300 68.0
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 6.6e-96 354.8 296 69.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.5e-95 353.6 294 69.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.5e-95 352.8 296 66.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 4.3e-95 352.1 325 63.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 5.6e-95 351.7 296 67.6
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 7.3e-95 351.3 294 66.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 1.2e-94 350.5 320 62.5
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 2.8e-94 349.4 304 64.8
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 8.0e-94 347.8 296 66.6
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 8.0e-94 347.8 297 66.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.5e-92 343.6 302 67.2
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.6e-92 342.8 359 57.4
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.4e-92 342.0 295 66.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.7e-91 340.1 296 65.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 2.4e-90 336.3 294 69.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.4e-90 336.3 265 70.6
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 7.0e-90 334.7 310 62.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.2e-89 334.0 293 63.8
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.0e-89 333.2 294 64.6
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 6.0e-89 331.6 294 66.7
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 7.8e-89 331.3 302 63.2
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.3e-88 330.5 293 63.1
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-87 326.6 293 63.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 5.6e-87 325.1 386 53.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.2e-86 323.9 295 63.7
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.8e-85 320.1 300 64.3
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.3e-85 319.7 255 68.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 3.4e-84 315.8 294 61.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.7e-83 312.4 341 58.1
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 6.4e-83 311.6 252 68.3
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 6.4e-83 311.6 388 51.5
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.4e-82 309.7 295 60.3
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.2e-81 307.4 300 62.3
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.6e-81 307.0 294 59.2
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.5e-81 305.8 258 66.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.3e-80 303.9 263 65.4
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.5e-79 300.4 262 65.3
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 4.3e-79 298.9 269 63.6
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.6e-78 297.0 298 60.4
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.9e-74 283.5 198 77.3
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 3.2e-74 282.7 292 61.3
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.7e-72 276.9 221 69.7
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.4e-69 267.3 239 65.3
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.5e-68 263.8 272 58.5
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.9e-66 256.9 215 68.4
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 3.2e-66 256.1 250 56.4
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.7e-65 253.1 183 75.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.6e-63 244.6 307 54.1
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 3.4e-60 236.1 174 73.6
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.9e-53 211.8 183 66.1
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 2.2e-51 206.8 286 47.6
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 7.1e-50 201.8 184 66.8
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 7.9e-49 198.4 240 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.0e-48 198.0 240 46.2
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.6e-47 191.4 149 69.8
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 6.2e-46 188.7 250 45.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 7.6e-44 181.8 221 45.2
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 7.4e-39 165.2 163 60.7
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.7e-38 162.9 243 39.9
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.9e-36 155.6 119 68.9
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.4e-34 151.0 230 41.7
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.4e-34 151.0 145 57.2
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.9e-34 150.6 180 54.4
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 2.8e-30 136.7 119 64.7
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 2.2e-27 127.1 80 86.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.2e-27 127.1 223 38.6
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.2e-26 122.9 130 54.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.2e-25 121.3 175 47.4
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.7e-24 115.5 119 56.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.4e-21 107.1 97 58.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.7e-19 100.9 106 56.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 5.0e-19 99.4 106 55.7
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.5e-18 97.1 106 55.7
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.4e-13 81.3 67 65.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.2e-10 69.7 170 28.2
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.6e-09 67.8 54 66.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.6e-09 67.8 54 66.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.6e-09 67.8 54 66.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.6e-09 67.8 54 66.7
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 3.7e-06 56.6 187 29.4


User provided reference genes

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