Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.3e-48 195.3 100 100.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.0e-48 194.9 100 99.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-47 193.0 100 98.0
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.3e-32 142.9 100 71.0
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 4.8e-30 134.4 100 70.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.4e-29 132.1 100 71.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 9.0e-29 130.2 100 71.0
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.2e-25 119.8 101 67.3
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.6e-25 119.4 106 65.1
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 3.5e-25 118.2 95 68.4
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 4.6e-25 117.9 101 65.3
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.0e-24 116.7 95 67.4
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.7e-24 115.9 99 64.6
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-24 115.9 101 65.3
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.7e-24 115.9 101 65.3
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.9e-24 114.8 95 64.2
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 3.9e-24 114.8 79 72.2
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 5.1e-24 114.4 89 62.9
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 6.6e-24 114.0 101 64.4
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 6.6e-24 114.0 100 64.0
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.5e-23 112.8 100 56.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 7.3e-23 110.5 95 66.3
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 9.6e-23 110.2 100 59.0
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 9.6e-23 110.2 78 66.7
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 3.6e-22 108.2 94 60.6
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 3.6e-22 108.2 100 58.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 6.2e-22 107.5 100 59.0
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.8e-21 105.9 94 60.6
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.8e-21 105.9 94 61.7
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 4.0e-21 104.8 95 62.1
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 9.0e-21 103.6 100 56.0
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 9.0e-21 103.6 94 58.5
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 9.0e-21 103.6 94 58.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.5e-20 102.8 89 65.2
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.5e-20 102.8 62 83.9
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 4.5e-20 101.3 92 64.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 9.9e-20 100.1 100 54.0
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.3e-19 99.8 100 55.0
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.3e-19 99.8 95 55.8
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 2.9e-19 98.6 94 59.6
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.8e-19 98.2 92 59.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.1e-18 96.7 94 58.5
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.4e-18 96.3 86 60.5
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.4e-18 96.3 79 67.1
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 3.2e-18 95.1 101 50.5
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 7.1e-18 94.0 92 56.5
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.1e-18 94.0 96 60.4
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.1e-17 92.4 94 55.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.5e-17 91.7 99 54.5
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 4.6e-17 91.3 104 51.9
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 6.0e-17 90.9 94 59.6
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 6.0e-17 90.9 93 52.7
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 7.9e-17 90.5 119 45.4
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 7.9e-17 90.5 86 57.0
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.0e-16 90.1 94 54.3
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.0e-16 90.1 93 55.9
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.3e-16 89.7 80 60.0
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.8e-16 89.4 81 63.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.8e-16 89.4 86 57.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 2.3e-16 89.0 86 60.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 3.0e-16 88.6 103 50.5
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.0e-16 88.6 67 68.7
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.0e-16 88.6 106 52.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.9e-16 88.2 93 54.8
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.9e-15 85.9 74 59.5
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.9e-15 85.9 63 69.8
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.9e-15 85.9 63 69.8
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 2.5e-15 85.5 93 52.7
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 2.5e-15 85.5 78 59.0
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 3.3e-15 85.1 93 52.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 3.3e-15 85.1 79 62.0
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.3e-15 85.1 82 58.5
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 5.6e-15 84.3 73 56.2
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 5.6e-15 84.3 105 51.4
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 7.4e-15 84.0 95 52.6
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 7.4e-15 84.0 83 57.8
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 7.4e-15 84.0 101 50.5
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 9.6e-15 83.6 96 53.1
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 9.6e-15 83.6 80 56.2
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.3e-14 83.2 100 55.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 6.2e-14 80.9 102 47.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 8.1e-14 80.5 100 51.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.1e-13 80.1 101 46.5
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.8e-13 79.3 92 51.1
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 3.1e-13 78.6 92 47.8
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 3.1e-13 78.6 106 46.2
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 3.1e-13 78.6 106 46.2
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.1e-13 78.6 85 52.9
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 5.3e-13 77.8 108 47.2
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.9e-13 77.4 85 52.9
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 6.9e-13 77.4 74 55.4
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 9.0e-13 77.0 91 50.5
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.0e-13 77.0 101 49.5
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.2e-12 76.6 105 44.8
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.5e-12 76.3 55 65.5
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 4.5e-12 74.7 77 53.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 4.5e-12 74.7 79 53.2
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.5e-12 74.7 101 50.5
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.0e-11 73.6 55 65.5
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 1.7e-11 72.8 90 52.2
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.7e-11 72.8 41 82.9
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 6.5e-11 70.9 101 46.5
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 8.4e-11 70.5 55 61.8
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 8.4e-11 70.5 55 61.8
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 8.4e-11 70.5 55 61.8
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 8.4e-11 70.5 55 61.8
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-10 70.1 55 60.0
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-10 70.1 55 60.0
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 1.1e-10 70.1 55 60.0
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.4e-10 69.7 55 69.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.4e-10 69.7 101 46.5
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 1.9e-10 69.3 48 75.0
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.5e-10 68.9 76 52.6
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.5e-10 68.9 75 56.0
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 2.5e-10 68.9 128 41.4
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.2e-10 68.2 96 42.7
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 7.1e-10 67.4 100 41.0
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 7.1e-10 67.4 100 41.0
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 7.1e-10 67.4 70 51.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.1e-09 65.9 78 50.0
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 2.7e-09 65.5 99 39.4
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 4.6e-09 64.7 72 48.6
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 6.0e-09 64.3 72 48.6
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 1.3e-08 63.2 47 70.2
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 3.9e-08 61.6 95 42.1
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 3.9e-08 61.6 95 42.1
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 3.9e-08 61.6 95 42.1
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 1.5e-07 59.7 54 59.3
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 3.3e-07 58.5 95 43.2
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 3.3e-07 58.5 95 43.2
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 9.6e-07 57.0 59 50.8
Migut.G00489 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.7e-06 55.1 63 54.0
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.8e-06 54.7 74 44.6
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 8.2e-06 53.9 120 36.7


User provided reference genes

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