Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.3e-169 599.0 331 100.0
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 6.6e-161 570.9 331 96.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.0e-149 532.7 331 90.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.8e-110 403.3 332 71.1
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.3e-97 360.5 418 55.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 8.2e-87 324.7 324 61.4
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 4.7e-82 308.9 367 54.5
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.1e-51 208.0 398 40.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.6e-50 204.1 396 40.9
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.4e-49 201.1 410 40.7
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.8e-45 185.3 374 38.0
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.8e-45 185.3 374 38.0
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-44 184.1 379 36.9
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.2e-42 177.9 406 35.2
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 6.2e-42 175.6 462 34.8
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 8.9e-41 171.8 498 32.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 5.8e-40 169.1 388 38.9
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.3e-39 167.9 345 37.7
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.4e-38 164.5 406 36.0
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.9e-38 164.1 408 36.3
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.4e-38 163.7 402 34.3
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 7.0e-38 162.2 387 36.7
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.6e-37 161.0 368 35.9
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.5e-37 159.8 428 36.0
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.5e-37 159.8 431 35.5
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 7.8e-37 158.7 411 34.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.0e-36 158.3 384 34.9
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.7e-36 157.5 337 35.0
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 8.6e-36 155.2 441 34.2
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.5e-35 153.7 372 35.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.3e-35 153.3 339 37.2
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 9.5e-35 151.8 451 32.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.6e-34 151.0 352 34.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.1e-34 150.6 407 36.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 3.6e-34 149.8 455 32.1
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 8.1e-34 148.7 323 34.7
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-33 147.9 346 35.3
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 1.4e-33 147.9 405 33.6
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 3.1e-33 146.7 339 35.7
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.1e-33 146.7 369 34.4
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 8.9e-33 145.2 448 32.1
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.0e-32 144.1 399 31.8
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 3.4e-32 143.3 439 29.6
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 7.5e-32 142.1 428 32.9
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.3e-31 141.4 399 35.1
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.2e-31 140.6 451 32.2
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-31 140.2 451 31.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 3.7e-31 139.8 467 28.9
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.9e-31 139.4 423 32.9
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 4.9e-31 139.4 382 32.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 4.9e-31 139.4 403 31.8
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 6.4e-31 139.0 460 28.5
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.1e-30 138.3 410 32.7
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.9e-30 137.5 499 29.7
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.4e-30 137.1 394 32.7
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.1e-30 136.3 342 34.2
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 7.1e-30 135.6 192 43.2
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 9.2e-30 135.2 395 30.6
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.2e-29 134.8 424 32.8
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.2e-29 134.8 583 28.0
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.1e-29 134.0 359 32.9
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.1e-29 134.0 447 31.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 2.1e-29 134.0 458 30.1
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 2.1e-29 134.0 458 30.1
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 3.5e-29 133.3 456 30.5
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 3.5e-29 133.3 439 29.2
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 7.8e-29 132.1 192 42.2
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-28 131.3 473 29.8
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 5.1e-28 129.4 452 29.0
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-27 128.3 473 29.6
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.9e-27 127.5 427 28.3
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 3.3e-27 126.7 434 29.7
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.3e-27 126.7 431 30.4
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 4.3e-27 126.3 427 28.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.6e-27 125.9 497 28.2
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.3e-27 125.6 449 30.3
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 7.3e-27 125.6 485 29.5
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 9.5e-27 125.2 165 44.2
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.7e-26 122.9 285 35.1
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 4.7e-26 122.9 215 36.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 6.2e-26 122.5 488 27.7
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.1e-25 121.7 472 26.9
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.4e-25 121.3 458 30.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.3e-25 120.6 497 27.6
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-25 120.6 275 34.9
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 6.8e-25 119.0 410 28.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 8.9e-25 118.6 519 27.0
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.2e-24 118.2 449 29.6
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.6e-24 117.1 469 30.7
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.4e-24 116.3 414 30.9
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 4.4e-24 116.3 468 29.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 7.6e-24 115.5 189 40.2
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 2.2e-23 114.0 402 29.6
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 2.2e-23 114.0 475 27.6
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.9e-23 113.6 552 26.1
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 2.9e-23 113.6 381 32.3
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 3.8e-23 113.2 433 27.3
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 4.9e-23 112.8 248 33.9
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 4.9e-23 112.8 441 27.9
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 6.4e-23 112.5 468 28.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.1e-22 111.7 197 41.1
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-22 111.7 321 29.9
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.9e-22 110.9 101 54.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 3.2e-22 110.2 455 27.3
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 3.2e-22 110.2 494 28.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 5.4e-22 109.4 210 37.6
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 7.1e-22 109.0 159 40.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 7.1e-22 109.0 438 29.7
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.1e-21 107.5 521 27.3
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.5e-21 106.7 425 28.7
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 6.0e-21 105.9 385 31.4
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 6.0e-21 105.9 385 31.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.0e-20 105.1 410 29.5
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.7e-20 104.4 123 47.2
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.0e-20 103.6 293 31.7
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.0e-20 103.6 524 26.1
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.1e-20 102.8 145 42.8
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 6.6e-20 102.4 403 27.3
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.1e-19 101.7 156 43.6
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.5e-19 101.3 258 32.2
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.9e-19 100.9 501 25.9
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 9.6e-19 98.6 154 43.5
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.6e-19 98.6 163 36.8
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 3.6e-18 96.7 497 25.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 4.7e-18 96.3 415 26.5
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 4.0e-17 93.2 161 38.5
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.2e-17 92.8 396 27.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 2.6e-16 90.5 105 40.0
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-14 85.1 209 33.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.4e-14 84.0 331 27.5
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 3.2e-14 83.6 147 35.4
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.7e-13 80.5 59 61.0
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 7.8e-13 79.0 102 40.2
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.3e-12 77.4 123 36.6
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 3.0e-12 77.0 99 41.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.5e-11 74.7 291 29.6
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 1.8e-09 67.8 48 66.7
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.4e-09 67.4 99 41.4
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.1e-09 67.0 48 62.5
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.5e-08 63.2 404 24.8
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 4.5e-08 63.2 110 36.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 2.9e-07 60.5 101 32.7
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 6.4e-07 59.3 81 35.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 1.1e-06 58.5 137 32.8
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.9e-06 57.8 45 55.6
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 3.2e-06 57.0 51 52.9
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 5.4e-06 56.2 113 33.6
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 7.1e-06 55.8 45 55.6


User provided reference genes

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