Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 8.5e-116 420.2 197 100.0
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.6e-98 361.7 169 100.0
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.7e-95 351.7 169 97.0
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 1.9e-83 312.8 169 87.6
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 1.4e-78 296.6 166 86.1
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.9e-75 286.2 152 88.2
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 5.2e-73 278.1 170 75.9
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 7.6e-72 274.2 170 75.9
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.7e-71 273.1 180 73.9
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 2.2e-71 272.7 170 75.9
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 2.2e-71 272.7 170 75.9
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 2.9e-71 272.3 173 74.6
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 6.4e-71 271.2 170 75.3
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 1.4e-70 270.0 174 74.1
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 5.4e-70 268.1 169 74.0
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 2.7e-69 265.8 171 74.9
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 3.5e-69 265.4 177 72.9
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 2.3e-68 262.7 159 75.5
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 5.1e-68 261.5 146 82.2
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 1.5e-67 260.0 150 81.3
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.4e-65 253.4 151 77.5
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 1.8e-65 253.1 150 77.3
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 3.1e-65 252.3 169 71.6
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 9.0e-65 250.8 150 75.3
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 9.0e-65 250.8 150 76.0
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.5e-64 250.0 150 75.3
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 1.5e-64 250.0 149 75.2
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 2.0e-64 249.6 160 74.4
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 9.9e-64 247.3 150 74.7
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 1.3e-63 246.9 150 77.3
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 3.8e-63 245.4 151 74.8
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 4.9e-63 245.0 150 73.3
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 3.2e-62 242.3 160 71.2
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 5.4e-62 241.5 194 62.9
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 9.3e-62 240.7 166 68.7
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.6e-61 240.0 159 71.1
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 4.6e-61 238.4 151 74.2
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 1.0e-60 237.3 169 66.9
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.7e-60 236.5 157 70.7
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 5.1e-60 235.0 151 72.8
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 5.1e-60 235.0 148 73.0
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 1.5e-59 233.4 150 72.0
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 1.3e-58 230.3 159 70.4
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 2.1e-58 229.6 154 74.7
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 3.6e-58 228.8 160 68.8
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 4.8e-58 228.4 154 74.0
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 4.8e-58 228.4 139 74.8
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 6.2e-58 228.0 139 74.8
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 6.2e-58 228.0 157 68.8
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 8.1e-58 227.6 156 67.3
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 1.4e-57 226.9 159 69.8
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 2.4e-57 226.1 151 70.2
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 2.4e-57 226.1 159 67.9
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 3.1e-57 225.7 139 73.4
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 6.9e-57 224.6 154 68.8
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.0e-56 223.0 159 68.6
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 2.0e-56 223.0 152 69.7
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 2.0e-56 223.0 163 65.0
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 5.8e-56 221.5 157 68.8
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 9.9e-56 220.7 168 64.3
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 9.9e-56 220.7 159 67.3
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 9.9e-56 220.7 165 64.2
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 2.9e-55 219.2 150 68.0
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 6.4e-55 218.0 157 64.3
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.9e-54 216.5 154 64.9
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 3.2e-54 215.7 150 64.7
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 4.2e-54 215.3 159 65.4
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 8.7e-52 207.6 150 66.7
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 1.9e-51 206.5 148 66.9
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 5.6e-51 204.9 141 68.1
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 1.1e-49 200.7 150 65.3
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 4.5e-48 195.3 135 68.9
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 2.9e-47 192.6 132 69.7
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 4.2e-46 188.7 166 57.2
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 1.6e-42 176.8 113 72.6
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 9.0e-41 171.0 163 53.4
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 1.5e-40 170.2 168 53.0
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 7.6e-40 167.9 168 52.4
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 7.6e-40 167.9 168 52.4
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 1.0e-39 167.5 163 52.8
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 2.2e-39 166.4 163 52.1
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 2.2e-39 166.4 163 52.1
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 5.0e-39 165.2 170 53.5
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 6.5e-39 164.9 166 53.6
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.4e-38 163.7 173 50.9
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.5e-38 162.9 169 51.5
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 1.2e-37 160.6 170 51.2
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 4.6e-37 158.7 168 51.8
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 2.5e-35 152.9 166 48.8
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 4.1e-33 145.6 128 54.7
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 7.2e-30 134.8 128 53.1
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 2.0e-27 126.7 75 80.0
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 1.8e-25 120.2 95 62.1
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 3.4e-24 115.9 89 62.9
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 4.7e-21 105.5 75 72.0
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 8.8e-20 101.3 62 72.6
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 3.1e-17 92.8 117 37.6
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 2.0e-16 90.1 117 36.8


User provided reference genes

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