Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.3e-198 693.7 359 100.0
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.8e-189 665.2 365 96.2
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-187 657.9 365 94.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.7e-152 542.3 370 78.4
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 6.0e-152 541.2 370 78.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-146 523.1 370 75.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-146 522.3 370 74.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.0e-146 521.5 370 75.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.0e-146 521.5 370 74.1
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.0e-146 521.5 370 75.1
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.1e-144 514.6 370 74.1
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 9.7e-134 480.7 359 72.4
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 8.2e-125 451.1 314 75.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 4.7e-112 408.7 369 60.2
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.8e-111 406.8 367 58.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 3.7e-109 399.1 371 59.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.1e-108 396.0 368 59.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.7e-107 391.3 369 56.1
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.8e-106 389.0 367 56.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.8e-106 389.0 367 56.7
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.1e-105 387.5 369 55.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 5.5e-105 385.2 368 55.7
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.2e-105 384.8 379 55.4
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 2.1e-104 383.3 371 56.3
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.8e-104 382.9 368 57.6
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.4e-103 380.6 370 56.5
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.0e-103 379.4 379 54.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 8.9e-103 377.9 367 55.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 8.9e-103 377.9 369 56.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.7e-101 372.5 368 56.2
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 4.1e-100 369.0 370 54.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.8e-99 364.8 365 52.3
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.7e-98 363.6 374 53.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.3e-98 363.2 410 50.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.5e-97 360.5 339 55.8
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.3e-95 353.2 375 52.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.1e-95 352.8 370 54.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.4e-94 349.4 329 56.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.8e-94 348.6 357 52.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 8.3e-93 344.7 352 54.0
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.9e-92 343.6 376 50.8
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 3.2e-92 342.8 372 53.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.8e-91 338.2 367 52.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.6e-90 335.1 374 48.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.6e-90 335.1 371 48.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 3.3e-89 332.8 366 50.8
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 4.3e-89 332.4 375 51.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.2e-88 330.9 319 57.7
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.6e-88 330.5 368 52.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-88 330.5 337 52.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.8e-88 329.7 368 52.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.8e-88 329.7 365 48.8
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.8e-88 329.7 369 50.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 8.0e-88 328.2 364 48.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.4e-87 327.4 368 50.3
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.8e-87 327.0 369 50.7
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 5.2e-87 325.5 367 52.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 8.9e-87 324.7 357 52.4
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-86 324.3 373 49.6
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.0e-86 323.6 373 48.8
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.9e-85 319.7 357 51.5
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.4e-84 317.4 357 49.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.9e-84 317.0 377 48.8
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.9e-84 317.0 368 48.1
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.4e-84 316.6 364 48.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 7.0e-84 315.1 370 47.3
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.1e-83 313.5 368 47.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 3.5e-83 312.8 368 49.5
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.6e-83 312.4 371 48.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 7.8e-83 311.6 368 48.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 5.6e-81 305.4 372 47.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 7.3e-81 305.1 374 51.9
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.7e-80 302.4 370 49.2
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 8.1e-80 301.6 371 46.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 5.2e-79 298.9 372 47.6
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 5.2e-79 298.9 372 47.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 8.9e-79 298.1 370 47.3
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.2e-78 297.7 370 46.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-78 297.4 371 47.2
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.5e-78 297.4 371 47.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.6e-78 296.6 372 47.6
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.6e-78 296.6 372 47.6
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.4e-78 295.8 369 48.0
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.7e-77 293.9 367 47.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.9e-77 293.1 370 47.0
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 4.9e-77 292.4 354 49.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 6.4e-77 292.0 371 46.1
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.4e-77 292.0 363 46.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 8.3e-77 291.6 370 47.0
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.2e-76 289.7 368 48.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 7.1e-76 288.5 368 47.3
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.2e-75 287.7 371 45.8
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-75 287.3 374 49.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.6e-75 287.3 310 50.0
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 46.1
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 46.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 46.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-75 287.0 370 46.2
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 46.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 3.5e-75 286.2 367 46.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 4.6e-75 285.8 376 46.0
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 6.0e-75 285.4 369 46.3
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-74 284.3 370 46.2
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.0e-74 283.1 341 48.7
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-73 280.4 352 46.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 5.6e-73 278.9 371 45.3
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.7e-72 275.8 366 46.4
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.8e-71 273.9 327 50.2
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.0e-70 270.4 369 45.8
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 2.6e-70 270.0 362 42.8
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 8.4e-69 265.0 395 45.1
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-68 264.6 372 46.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 4.2e-68 262.7 327 46.5
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 7.1e-68 261.9 302 49.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 6.0e-67 258.8 370 45.4
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.3e-66 256.9 320 45.6
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.3e-66 256.9 376 41.5
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.3e-65 252.7 358 43.3
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 8.1e-64 248.4 369 41.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-63 247.7 134 91.0
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-62 244.2 132 93.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 7.6e-62 241.9 283 49.5
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.2e-59 234.6 348 44.8
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.6e-59 234.2 273 46.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-59 233.8 126 92.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.5e-59 233.0 369 42.0
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 8.7e-58 228.4 374 41.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 5.6e-57 225.7 349 39.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.3e-56 224.6 121 91.7
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.3e-55 219.2 334 40.7
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.2e-51 208.0 378 38.1
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 7.9e-51 205.3 198 54.0
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 3.8e-45 186.4 327 37.6
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-40 171.0 281 40.9
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-37 161.4 117 70.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 2.5e-33 147.1 116 66.4
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.9e-26 123.2 380 31.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.8e-23 114.4 251 32.3
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.5e-22 109.8 153 43.1
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.7e-21 107.8 376 30.3
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.1e-20 105.1 263 32.3
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 5.5e-20 102.8 378 28.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.4e-18 98.2 387 26.1
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.6e-17 94.0 101 48.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.8e-16 89.7 379 26.6
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 8.5e-13 79.0 242 26.9
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.2e-11 75.1 62 54.8
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.3e-10 70.9 104 40.4
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 9.7e-09 65.5 84 42.9
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 8.2e-08 62.4 366 23.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.5e-06 56.6 129 27.1


User provided reference genes

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