Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 5.4e-150 534.3 264 100.0
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 6.0e-141 504.2 291 87.6
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 8.1e-138 493.8 291 86.6
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 3.4e-51 206.1 485 33.0
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 2.2e-50 203.4 201 56.2
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 7.6e-35 151.8 316 35.1
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 6.4e-26 122.1 221 37.1
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.1e-25 121.3 325 31.1
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 5.5e-25 119.0 238 41.2
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 9.3e-25 118.2 244 34.4
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.1e-24 117.1 199 37.7
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 1.1e-22 111.3 189 39.2
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 5.6e-22 109.0 221 36.7
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 5.6e-22 109.0 214 33.6
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 9.6e-22 108.2 207 35.7
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 4.8e-21 105.9 223 32.3
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 4.8e-21 105.9 229 34.9
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.1e-20 104.8 206 31.1
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.4e-20 104.4 312 29.2
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 4.0e-20 102.8 200 34.0
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 6.9e-20 102.1 221 30.3
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 6.9e-20 102.1 304 29.9
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 9.0e-20 101.7 261 31.0
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.2e-19 101.3 221 30.3
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.2e-19 101.3 221 31.2
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 1.5e-19 100.9 181 36.5
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 2.0e-19 100.5 221 30.3
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 2.6e-19 100.1 204 32.8
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.6e-19 100.1 250 29.6
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 3.4e-19 99.8 297 30.0
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 4.5e-19 99.4 238 34.0
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 5.8e-19 99.0 222 30.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 7.6e-19 98.6 299 28.4
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 7.6e-19 98.6 299 28.4
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 7.6e-19 98.6 282 31.2
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.3e-18 97.8 202 32.7
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 2.2e-18 97.1 238 31.5
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.2e-18 97.1 252 31.3
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.9e-18 96.7 266 29.7
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 3.8e-18 96.3 224 31.2
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 4.9e-18 95.9 205 31.2
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 2.5e-17 93.6 232 31.0
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 3.2e-17 93.2 211 30.3
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 3.2e-17 93.2 211 30.3
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 4.2e-17 92.8 211 29.9
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 4.2e-17 92.8 211 29.9
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 4.2e-17 92.8 183 33.9
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 5.5e-17 92.4 278 27.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 9.3e-17 91.7 211 29.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 2.1e-16 90.5 220 34.5
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 2.7e-16 90.1 185 34.1
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 2.7e-16 90.1 211 31.3
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 2.7e-16 90.1 199 33.7
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 4.6e-16 89.4 185 34.1
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 7.9e-16 88.6 183 34.4
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 7.9e-16 88.6 181 37.0
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 3.9e-15 86.3 252 27.4
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 6.7e-15 85.5 178 34.3
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 8.7e-15 85.1 196 30.1
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 1.9e-14 84.0 222 32.4
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 4.3e-14 82.8 178 30.9
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 3.7e-13 79.7 187 30.5
Ca_01266_v3 Cicer arietinum L. HOM05D010840 ORTHO05D009787 8.2e-13 78.6 166 33.7
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 2.4e-12 77.0 219 32.4
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 3.1e-12 76.6 107 42.1
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 9.0e-12 75.1 191 29.3
MBI08_g22655_MAGBIO Magnolia biondii HOM05D008213 ORTHO05D009787 1.5e-11 74.3 292 27.4
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 2.0e-11 73.9 191 33.5
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 2.6e-11 73.6 205 27.8
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 2.6e-11 73.6 199 31.2
Lj3g0021471 Lotus japonicus HOM05D010840 ORTHO05D009787 4.5e-11 72.8 195 29.2
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 5.9e-11 72.4 263 28.9
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 5.0e-10 69.3 185 30.8
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 1.9e-09 67.4 216 27.3
TPR.G18857 Trifolium pratense HOM05D010840 ORTHO05D009787 1.9e-09 67.4 218 30.7
Lalb_Chr24g0396871 Lupinus albus HOM05D010840 ORTHO05D009787 4.2e-09 66.2 162 29.0
Medtr2g098620 Medicago truncatula HOM05D010840 ORTHO05D009787 1.2e-08 64.7 184 28.8
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 6.1e-08 62.4 167 29.3
Sc13g0006830 Simmondsia chinensis HOM05D022167 ORTHO05D009787 1.8e-07 60.8 208 26.0
Phvul.005G152200 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 3.0e-07 60.1 171 27.5
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 5.1e-07 59.3 179 27.9
Lsat_1_v5_gn_6_57280 Lactuca sativa HOM05D008213 ORTHO05D009787 1.5e-06 57.8 297 27.6
TPR.G12768 Trifolium pratense HOM05D010840 ORTHO05D009787 1.5e-06 57.8 241 25.7
AUR62002285 Chenopodium quinoa HOM05D022167 ORTHO05D009787 5.7e-06 55.8 196 27.0
Glyma.13G343400 Glycine max HOM05D010840 ORTHO05D009787 7.4e-06 55.5 49 46.9
Os12g0230133 Oryza sativa ssp. japonica HOM05D065009 ORTHO05D009787 7.4e-06 55.5 200 27.0
AUR62015410 Chenopodium quinoa HOM05D022167 ORTHO05D009787 9.7e-06 55.1 201 27.9


User provided reference genes

Program Settings