Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 0.0e+00 1209.5 642 100.0
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 0.0e+00 1205.7 642 99.7
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 3.1e-231 805.4 653 67.7
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.1e-220 770.4 411 96.8
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 3.0e-210 735.7 653 61.6
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.3e-202 710.3 653 60.8
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 2.3e-130 470.3 704 42.5
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 2.1e-126 457.2 676 43.2
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.0e-125 454.9 661 42.4
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 2.5e-124 450.3 679 43.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.2e-121 441.4 652 41.7
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 7.1e-119 432.2 685 41.8
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 3.9e-117 426.4 697 40.5
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 8.6e-117 425.2 685 40.0
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 4.0e-114 416.4 637 42.9
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.4e-113 413.3 636 42.0
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 3.5e-110 403.3 653 39.4
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.5e-108 397.1 658 40.1
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 7.3e-108 395.6 651 39.2
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 7.3e-108 395.6 686 38.5
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 6.2e-107 392.5 679 38.7
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.6e-105 387.1 678 39.2
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 2.9e-104 383.6 661 39.9
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 8.4e-104 382.1 667 36.6
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 8.4e-104 382.1 653 40.1
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.4e-103 381.3 684 37.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.2e-102 378.3 685 37.8
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.6e-102 377.9 712 37.9
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.6e-102 376.3 654 39.9
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-101 374.8 653 39.5
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 8.7e-101 372.1 650 38.9
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 8.7e-101 372.1 636 39.0
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.1e-100 371.7 683 37.2
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 2.5e-100 370.5 681 37.4
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 5.6e-100 369.4 666 36.6
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 5.6e-100 369.4 658 38.8
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 9.6e-100 368.6 642 38.0
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.3e-99 368.2 641 37.8
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 6.2e-99 365.9 637 37.2
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.4e-98 364.8 645 37.5
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 4.0e-98 363.2 692 37.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 6.9e-98 362.5 644 36.6
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 9.0e-98 362.1 683 36.3
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 4.5e-97 359.8 671 36.8
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.7e-96 357.8 522 44.1
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 8.4e-96 355.5 629 37.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.4e-95 354.8 620 37.4
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 1.4e-95 354.8 651 37.3
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.9e-95 354.4 676 35.4
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 4.2e-95 353.2 643 36.7
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.1e-94 350.9 654 37.2
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 1.3e-93 348.2 674 36.2
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 3.0e-93 347.1 653 35.5
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 5.1e-93 346.3 721 36.2
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 8.7e-93 345.5 659 35.2
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.9e-92 344.4 693 35.1
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.6e-91 341.3 677 36.2
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.6e-91 341.3 677 36.2
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.5e-89 333.2 659 35.2
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 7.6e-89 332.4 708 35.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 2.9e-88 330.5 665 36.1
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 4.2e-87 326.6 592 37.3
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 4.2e-87 326.6 679 34.9
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 9.3e-87 325.5 612 38.9
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.9e-85 320.1 190 98.4
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 6.3e-83 312.8 682 34.3
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.4e-82 311.6 602 40.2
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 5.9e-81 306.2 647 34.9
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.0e-80 305.4 643 36.4
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 6.1e-78 296.2 673 35.1
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.8e-77 294.7 649 35.3
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.9e-76 291.2 467 40.9
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 2.8e-75 287.3 665 34.3
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 4.8e-75 286.6 544 37.5
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 8.2e-75 285.8 655 31.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 5.1e-69 266.5 660 32.7
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.0e-68 264.6 590 35.3
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.3e-68 263.8 549 35.9
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.3e-67 261.9 615 33.5
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.8e-67 260.8 549 35.7
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.3e-67 259.6 672 32.0
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.4e-66 258.5 674 31.3
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 1.2e-65 255.4 590 33.1
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 2.0e-65 254.6 703 30.3
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 5.0e-64 250.0 689 30.9
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.1e-63 248.8 304 50.7
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.9e-63 248.1 638 32.1
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 3.2e-63 247.3 711 29.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 4.2e-63 246.9 674 31.5
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.0e-61 242.3 703 30.3
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.3e-61 241.1 652 31.0
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 6.7e-61 239.6 629 31.5
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 2.6e-60 237.7 433 38.8
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 6.3e-59 233.0 669 31.7
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 8.0e-54 216.1 648 29.9
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.4e-53 215.3 539 32.5
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.1e-50 205.7 524 32.1
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.4e-50 205.3 433 37.2
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.8e-50 204.9 640 28.1
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.9e-48 197.6 304 42.4
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.5e-47 195.3 344 39.8
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.0e-40 172.6 328 35.7
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.0e-37 161.0 518 30.9
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 7.5e-36 156.4 648 24.8
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 3.7e-35 154.1 582 27.0
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 8.6e-32 142.9 308 39.0
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 1.9e-26 125.2 460 26.3
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.2e-26 124.4 361 29.4
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 4.0e-21 107.5 625 28.2
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.0e-21 107.5 383 25.1
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 2.8e-14 84.7 329 27.1
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 3.1e-13 81.3 98 48.0
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.7e-11 74.3 100 42.0
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 6.4e-11 73.6 58 62.1
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.4e-10 72.4 340 25.3
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 8.6e-08 63.2 139 31.7
SMO367G0476 Selaginella moellendorffii HOM05D026854 ORTHO05D008189 1.5e-07 62.4 462 24.7


User provided reference genes

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