Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 0.0e+00 1136.7 596 100.0
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 0.0e+00 1133.6 596 99.7
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 0.0e+00 1119.0 596 98.3
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.3e-295 1019.2 596 88.9
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.5e-293 1012.3 596 87.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.0e-286 986.5 596 85.6
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.0e-286 986.5 596 85.9
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.4e-283 979.2 596 84.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 5.0e-268 927.5 597 81.9
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.5e-267 925.2 592 80.4
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.5e-267 924.1 592 82.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.4e-265 919.5 597 81.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 6.7e-265 917.1 602 79.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 5.7e-264 914.1 597 81.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 9.7e-264 913.3 591 80.2
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.7e-264 913.3 595 80.0
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.3e-263 910.6 596 81.2
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.4e-262 909.4 596 81.4
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.8e-262 909.1 597 79.6
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.1e-262 907.9 587 81.4
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 9.1e-262 906.7 598 80.9
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 9.1e-262 906.7 602 79.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-261 906.4 581 81.8
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-261 906.4 596 81.2
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.5e-261 904.8 597 80.1
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.9e-261 904.0 587 81.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.3e-260 902.9 592 79.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.3e-260 902.9 592 78.4
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.7e-260 902.5 588 80.8
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.5e-260 900.6 587 80.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.5e-259 899.4 587 79.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.2e-259 898.3 594 78.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 5.5e-259 897.5 586 80.7
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.2e-258 896.3 590 79.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.6e-258 896.0 586 79.4
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.1e-258 895.6 593 79.8
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.1e-258 895.6 601 79.5
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 6.1e-258 894.0 581 79.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.8e-257 892.5 589 78.9
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.0e-257 891.7 601 79.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.2e-256 889.8 589 78.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-256 888.6 589 78.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 4.8e-255 884.4 593 78.6
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-255 884.0 589 78.4
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.3e-255 884.0 592 78.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.4e-254 882.1 597 78.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.6e-253 879.4 592 78.2
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 4.5e-253 877.9 597 77.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 4.5e-253 877.9 597 77.9
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.0e-252 876.7 562 81.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.0e-252 876.7 593 77.2
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 8.5e-252 873.6 633 73.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 3.2e-251 871.7 587 77.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.4e-251 870.2 592 77.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-250 869.8 597 76.0
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.4e-249 866.3 702 67.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.3e-247 857.4 594 76.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.4e-246 856.3 691 67.9
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 4.1e-246 854.7 591 76.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.1e-246 853.6 597 74.2
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-245 853.2 593 76.1
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.7e-245 852.0 592 76.7
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 3.5e-245 851.7 593 75.7
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-244 850.1 596 75.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.0e-244 850.1 593 75.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.0e-244 850.1 594 75.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.3e-244 849.0 594 75.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.3e-244 849.0 593 75.4
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.6e-244 847.4 584 75.9
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.9e-243 845.9 508 84.8
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.5e-243 845.5 594 75.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 2.5e-243 845.5 597 75.2
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.8e-242 842.0 594 74.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.7e-242 841.3 593 75.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-241 840.1 595 74.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.8e-241 839.3 596 74.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.8e-241 839.3 584 75.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.0e-241 838.2 599 74.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-240 836.6 595 74.8
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-240 836.3 594 74.9
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.0e-240 835.9 594 74.9
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.4e-238 829.7 597 73.2
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.8e-238 829.3 589 73.5
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.4e-238 828.9 618 71.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-238 827.4 593 74.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.0e-237 825.9 571 76.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.7e-237 825.5 586 74.4
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-236 823.2 594 74.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.7e-236 822.8 588 73.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.3e-236 822.4 588 75.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.1e-235 820.1 560 76.8
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-235 819.3 576 75.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.5e-235 818.9 594 72.9
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.2e-234 816.6 568 75.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 4.7e-234 814.7 598 72.7
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 8.0e-234 813.9 599 73.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.4e-233 813.1 598 72.6
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 3.0e-233 812.0 596 73.0
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 5.2e-233 811.2 597 72.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.4e-232 808.1 589 72.2
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-231 806.6 589 72.7
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.1e-230 803.5 588 71.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 4.1e-230 801.6 597 72.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.2e-229 800.0 592 72.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 5.6e-227 791.2 590 72.5
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.1e-226 789.3 593 72.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.8e-226 788.9 511 80.0
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.6e-226 788.5 589 69.4
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 8.0e-226 787.3 593 69.5
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 5.8e-224 781.2 593 71.8
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.8e-224 781.2 595 71.1
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.5e-219 766.5 604 69.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.0e-212 743.8 587 67.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.3e-212 742.7 560 70.2
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.2e-210 736.9 568 69.7
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.0e-209 731.9 582 66.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 5.1e-204 714.9 604 65.4
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.1e-204 714.9 597 66.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.4e-201 706.8 599 65.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 3.9e-196 688.7 522 69.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.7e-186 655.6 516 68.6
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-185 654.1 433 79.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.1e-180 635.2 448 74.8
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-173 614.0 478 67.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 8.7e-172 607.8 507 67.1
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-160 569.7 379 78.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 4.5e-160 568.9 535 59.6
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.3e-153 545.4 371 75.7
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.0e-148 529.6 581 57.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.7e-141 505.8 526 53.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-135 486.5 399 67.4
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.6e-133 480.7 322 77.0
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 7.0e-121 438.7 252 89.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.9e-118 430.6 309 73.8
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 5.8e-107 392.5 515 47.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.0e-99 367.5 561 42.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.4e-92 344.7 229 76.9
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.9e-90 336.3 228 78.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.1e-81 305.8 232 70.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-73 281.2 210 69.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.5e-65 254.2 258 53.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.8e-61 240.7 349 42.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.6e-48 198.4 126 83.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.0e-47 194.1 266 43.2
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.5e-38 165.2 129 65.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.0e-31 142.5 137 58.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.6e-24 118.6 187 43.3
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-23 115.9 216 41.2
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.4e-23 115.5 106 60.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 5.7e-22 110.2 93 63.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.5e-17 94.7 81 64.2
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.2e-17 94.0 50 88.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-16 92.4 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-16 92.4 52 88.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.5e-14 85.5 52 84.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.8e-14 82.8 65 69.2
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 7.0e-12 76.6 72 59.7
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 9.1e-12 76.3 71 60.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 7.7e-11 73.2 72 56.9
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 5.6e-09 67.0 57 52.6
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.2e-08 65.9 57 61.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 96.7
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.4e-07 62.4 117 37.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.4e-06 57.4 241 27.0
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 7.5e-06 56.6 57 43.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 9.8e-06 56.2 55 61.8


User provided reference genes

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