Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 9.9e-214 746.5 376 100.0
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.3e-210 736.1 377 96.0
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 8.2e-200 700.3 377 95.0
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.7e-163 578.2 378 79.9
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 6.1e-155 551.2 378 75.4
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.2e-137 493.8 379 71.2
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.2e-129 467.2 378 68.8
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.7e-125 453.4 381 65.4
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.7e-125 453.4 420 63.1
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.5e-124 450.3 380 66.6
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.9e-124 449.9 397 65.5
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.2e-123 447.2 382 64.7
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 4.0e-114 415.6 396 62.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.4e-111 406.4 384 61.7
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 9.3e-111 404.4 381 61.7
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.7e-109 400.2 378 62.4
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 3.3e-108 396.0 378 60.8
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 5.6e-108 395.2 405 58.5
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.8e-107 392.9 395 58.7
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 9.0e-106 387.9 386 58.5
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.8e-105 385.2 384 59.9
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.6e-105 384.8 363 60.9
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.3e-104 384.0 380 58.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.0e-101 374.4 390 57.9
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 1.0e-101 374.4 397 57.9
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.7e-101 373.6 397 57.7
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 8.7e-101 371.3 314 67.8
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.9e-100 370.2 381 59.3
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.1e-98 362.8 381 57.5
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 4.0e-98 362.5 311 67.5
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 4.0e-98 362.5 306 66.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 5.3e-98 362.1 308 67.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 6.9e-98 361.7 341 61.9
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.7e-96 357.1 319 63.6
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.2e-96 356.7 529 45.4
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.8e-96 355.9 367 56.9
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 4.9e-96 355.5 433 50.8
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 6.4e-96 355.1 383 59.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.4e-95 354.0 371 57.4
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.9e-95 353.6 384 56.8
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 9.3e-95 351.3 312 63.8
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 9.3e-95 351.3 362 58.0
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 3.5e-94 349.4 390 56.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.3e-93 347.4 384 59.1
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 5.1e-93 345.5 431 53.4
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 6.7e-93 345.1 365 57.5
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 6.7e-93 345.1 402 54.2
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 6.7e-93 345.1 361 57.1
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 8.7e-93 344.7 340 60.3
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.6e-92 342.0 385 55.3
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.7e-91 339.3 369 58.8
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.7e-91 339.3 369 58.8
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 1.8e-90 337.0 405 53.3
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 4.5e-89 332.4 381 54.1
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.9e-88 329.7 375 56.0
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.9e-88 329.7 362 55.8
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.9e-88 329.7 308 60.1
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.9e-88 328.9 320 60.9
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.9e-88 328.9 370 55.7
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 8.4e-88 328.2 302 61.6
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 4.6e-86 322.4 315 59.7
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 1.0e-85 321.2 375 55.2
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.8e-85 320.5 313 62.0
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.1e-84 317.8 458 46.9
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 2.5e-84 316.6 534 42.9
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.8e-83 312.4 387 53.0
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 8.2e-83 311.6 382 55.5
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.1e-82 311.2 322 58.1
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.4e-82 310.8 429 50.3
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 4.1e-82 309.3 312 62.2
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 9.0e-82 308.1 330 56.4
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 5.9e-81 305.4 404 51.0
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 3.9e-77 292.7 314 56.1
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 3.9e-77 292.7 382 51.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 6.7e-77 292.0 399 52.9
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 6.3e-75 285.4 240 68.8
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 5.3e-74 282.3 300 58.7
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.6e-73 280.0 392 50.0
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 5.9e-73 278.9 334 51.5
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 7.9e-70 268.5 385 49.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 2.5e-68 263.5 383 49.6
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 5.7e-68 262.3 397 48.9
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 2.6e-65 253.4 362 49.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 4.2e-63 246.1 300 49.0
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 2.1e-62 243.8 281 52.3
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 6.7e-61 238.8 347 48.4
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.6e-60 236.9 463 40.8
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.7e-59 234.2 401 45.1
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.4e-58 231.1 392 45.4
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.6e-57 226.9 479 40.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 2.2e-56 223.8 201 57.2
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 5.0e-56 222.6 399 45.1
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.5e-55 221.1 404 44.6
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 2.5e-55 220.3 225 60.4
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.0e-53 214.9 379 45.1
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.0e-53 214.9 488 38.5
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 3.0e-53 213.4 400 43.2
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 5.2e-53 212.6 503 37.6
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 7.5e-52 208.8 407 42.8
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.4e-50 204.5 205 58.0
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 3.4e-44 183.3 394 42.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 9.8e-44 181.8 317 43.8
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.3e-43 181.4 384 41.7
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.1e-42 175.3 240 49.2
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.3e-40 171.4 380 41.3
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 8.5e-40 168.7 374 41.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 9.4e-39 165.2 380 41.3
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 2.7e-38 163.7 323 43.0
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.8e-37 161.0 293 45.4
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 6.3e-35 152.5 333 37.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.7e-33 147.1 342 40.1
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 8.6e-32 142.1 381 37.8
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 8.6e-32 142.1 381 37.8
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 5.6e-31 139.4 297 42.8
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 4.0e-29 133.3 250 42.8
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 5.7e-28 129.4 339 36.3
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 9.8e-28 128.6 412 36.9
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 1.0e-24 118.6 405 34.6
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.3e-23 113.6 323 34.7
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.6e-23 112.8 372 35.2
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 6.2e-22 109.4 310 37.1
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.4e-20 103.6 328 35.1
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 5.8e-20 102.8 326 35.6
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 4.9e-19 99.8 321 34.3
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 2.4e-18 97.4 393 33.6
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 8.6e-16 89.0 75 65.3
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.3e-15 85.9 281 32.4
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.8e-13 81.3 133 43.6
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.2e-12 78.6 78 60.3
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 1.1e-10 72.0 74 63.5
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 1.4e-10 71.6 67 65.7
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.4e-10 70.9 171 36.8
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 7.1e-10 69.3 37 75.7
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.8e-09 65.9 237 32.9
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 7.3e-07 59.3 72 56.9
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 2.8e-06 57.4 43 58.1


User provided reference genes

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