Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-85 319.3 166 100.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-85 319.3 166 100.0
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.3e-85 318.9 166 99.4
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.1e-63 246.9 166 77.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 3.0e-61 238.8 158 76.6
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.1e-60 236.9 158 75.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.5e-60 235.7 158 74.7
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.3e-60 234.2 158 74.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 7.3e-60 234.2 158 74.1
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.1e-58 230.3 165 69.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 3.1e-58 228.8 153 73.9
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.6e-57 225.7 163 71.2
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.6e-57 225.7 160 70.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 3.4e-57 225.3 158 73.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.4e-57 224.9 153 72.5
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 5.8e-57 224.6 153 72.5
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 7.6e-57 224.2 153 73.2
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 9.9e-57 223.8 158 69.6
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.3e-56 223.4 158 70.9
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.7e-56 223.0 158 69.0
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.9e-56 222.2 158 71.5
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.9e-56 222.2 153 71.2
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 4.9e-56 221.5 153 72.5
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 6.4e-56 221.1 161 69.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.4e-56 221.1 158 69.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 8.4e-56 220.7 157 70.1
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.4e-55 219.9 158 67.7
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.4e-55 219.9 153 72.5
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.9e-55 219.5 153 71.9
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.9e-55 219.5 153 71.2
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 3.2e-55 218.8 161 69.6
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 3.2e-55 218.8 156 67.9
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 4.2e-55 218.4 153 71.9
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.2e-55 218.4 153 70.6
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.4e-55 218.0 153 72.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 5.4e-55 218.0 153 71.2
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 7.1e-55 217.6 156 67.9
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 9.3e-55 217.2 155 69.7
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 9.3e-55 217.2 161 68.9
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 9.3e-55 217.2 158 65.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.2e-54 216.9 150 73.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.1e-54 216.1 150 74.0
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.1e-54 216.1 153 71.2
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.1e-54 216.1 164 67.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-54 215.7 153 70.6
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.7e-54 215.7 153 70.6
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 3.5e-54 215.3 161 65.8
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.5e-54 215.3 164 65.2
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 4.6e-54 214.9 156 68.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-53 213.8 153 69.9
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.0e-53 213.8 153 69.9
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.0e-53 213.8 153 70.6
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.0e-53 213.8 152 69.7
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.3e-53 213.4 153 71.2
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-53 213.0 153 69.9
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.3e-53 212.6 153 69.9
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.9e-53 211.8 161 67.7
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.9e-53 211.8 164 67.1
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 3.9e-53 211.8 158 67.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.9e-53 211.8 168 62.5
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.6e-53 211.1 160 63.8
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-52 210.3 158 67.1
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.9e-52 209.5 153 70.6
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.9e-52 209.5 161 65.8
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 2.5e-52 209.1 153 68.0
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 7.3e-52 207.6 157 66.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 7.3e-52 207.6 158 67.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 7.3e-52 207.6 157 66.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 7.3e-52 207.6 153 67.3
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 7.3e-52 207.6 156 66.7
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 7.3e-52 207.6 160 65.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.3e-51 206.8 153 65.4
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.3e-51 206.8 161 65.8
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.3e-51 206.8 153 70.6
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.6e-51 206.5 154 69.5
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.1e-51 206.1 156 66.7
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.1e-51 206.1 160 65.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.1e-51 206.1 156 66.0
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.8e-51 205.7 153 68.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.6e-51 205.3 153 68.6
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.6e-51 205.3 176 60.8
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.8e-51 204.9 153 66.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.8e-51 204.9 160 64.4
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.8e-51 204.9 153 65.4
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 6.2e-51 204.5 156 67.3
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 8.1e-51 204.1 154 65.6
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.4e-50 203.4 152 66.4
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.4e-50 203.4 160 64.4
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.4e-50 203.4 153 68.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.8e-50 203.0 153 66.7
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.4e-50 202.6 152 66.4
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-50 202.6 152 66.4
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-50 202.6 152 66.4
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.4e-50 202.6 152 66.4
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.4e-50 202.6 159 66.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.4e-50 202.6 154 63.6
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 3.1e-50 202.2 152 67.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.0e-50 201.8 153 65.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 4.0e-50 201.8 153 65.4
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 4.0e-50 201.8 156 66.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.9e-50 201.1 152 65.8
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.9e-50 201.1 152 65.8
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.9e-50 201.1 153 60.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 6.9e-50 201.1 153 67.3
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-49 200.3 154 64.9
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.0e-49 199.5 160 65.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.0e-49 199.5 153 66.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 2.6e-49 199.1 158 62.0
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.6e-49 199.1 160 65.0
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.4e-49 198.7 152 63.8
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.2e-48 196.1 184 57.6
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 4.9e-48 194.9 150 65.3
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 4.9e-48 194.9 158 62.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.4e-48 194.5 124 79.8
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 8.4e-48 194.1 158 60.8
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.4e-47 193.4 149 65.8
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.2e-47 192.2 161 65.2
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 4.2e-47 191.8 162 60.5
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 7.1e-47 191.0 138 70.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 9.3e-47 190.7 210 52.9
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.1e-46 189.5 136 71.3
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 6.0e-46 188.0 153 60.1
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 7.8e-46 187.6 159 58.5
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-45 187.2 187 56.7
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 5.1e-45 184.9 183 54.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.7e-45 184.1 153 59.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 7.3e-44 181.0 125 72.0
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.3e-43 180.3 120 72.5
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 6.2e-43 177.9 178 55.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.2e-43 177.9 123 72.4
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 6.2e-43 177.9 125 68.8
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.1e-42 177.2 119 73.9
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.8e-42 176.4 125 70.4
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.0e-42 175.3 123 71.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 5.3e-42 174.9 134 66.4
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 6.9e-42 174.5 141 63.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.9e-41 170.6 120 68.3
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.9e-39 166.4 151 53.6
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.0e-38 161.4 144 54.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 7.9e-38 161.0 149 53.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.0e-37 159.1 145 54.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.9e-37 158.7 120 64.2
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 7.4e-36 154.5 150 48.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.6e-35 153.3 106 77.4
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 4.8e-35 151.8 149 48.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 2.4e-34 149.4 136 61.8
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.5e-33 146.7 153 49.0
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.5e-33 145.2 114 66.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.3e-32 143.7 152 46.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.3e-32 143.7 114 62.3
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.7e-32 143.3 119 63.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 5.5e-31 138.3 114 64.9
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 8.7e-29 131.0 88 69.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.4e-26 123.6 93 67.7
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.7e-24 116.7 88 68.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.5e-20 102.8 105 56.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 3.1e-18 95.9 141 44.0
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-16 90.9 90 55.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.7e-13 78.2 89 44.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 5.9e-09 65.1 50 54.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-07 60.5 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.4e-07 60.5 46 69.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 7.2e-07 58.2 47 66.0
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 4.7e-06 55.5 44 63.6
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 6.1e-06 55.1 46 63.0


User provided reference genes

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