Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 6.5e-177 624.0 328 100.0
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 7.2e-160 567.4 328 92.1
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.1e-155 552.0 330 90.0
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 1.0e-126 457.2 330 75.8
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 1.1e-115 420.6 337 68.0
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 7.1e-115 417.9 330 69.1
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 3.5e-114 415.6 337 65.3
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 1.0e-113 414.1 329 68.7
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 5.1e-113 411.8 331 68.9
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.5e-112 410.2 285 72.6
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 9.5e-112 407.5 295 73.2
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 8.1e-111 404.4 295 70.5
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.4e-110 403.7 280 73.6
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 2.3e-110 402.9 308 72.4
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 1.2e-109 400.6 322 67.1
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 8.4e-108 394.4 283 72.4
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.9e-107 393.3 326 66.6
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 3.2e-107 392.5 282 71.6
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 5.4e-107 391.7 330 64.5
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 9.2e-107 391.0 335 63.3
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 4.6e-106 388.7 332 63.3
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 4.6e-106 388.7 322 64.3
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 7.8e-106 387.9 345 62.9
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.0e-105 387.5 296 68.9
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.3e-105 387.1 330 64.8
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.5e-104 383.6 317 65.0
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 4.3e-104 382.1 291 68.7
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 7.3e-104 381.3 344 61.3
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 7.3e-104 381.3 295 67.5
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.2e-103 380.6 294 69.7
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.2e-103 380.6 324 65.7
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.2e-103 380.6 286 69.2
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 3.6e-103 379.0 296 65.9
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 6.2e-103 378.3 328 63.4
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 6.2e-103 378.3 295 67.1
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 8.1e-103 377.9 282 68.8
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 8.1e-103 377.9 284 68.0
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.8e-102 376.7 286 68.5
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 2.4e-102 376.3 282 68.4
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 4.0e-102 375.6 282 69.1
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 4.0e-102 375.6 268 70.1
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 4.0e-102 375.6 295 67.1
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 5.2e-102 375.2 337 63.5
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 8.9e-102 374.4 259 73.4
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 8.9e-102 374.4 276 70.3
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 8.9e-102 374.4 335 61.5
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 1.2e-101 374.0 329 62.0
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 2.6e-101 372.9 285 66.3
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 2.6e-101 372.9 291 66.7
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 5.8e-101 371.7 327 61.5
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 9.9e-101 370.9 285 66.0
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 2.2e-100 369.8 282 67.4
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 2.2e-100 369.8 323 61.9
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 3.8e-100 369.0 261 71.6
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 4.9e-100 368.6 327 63.3
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 6.4e-100 368.2 291 66.7
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 8.4e-100 367.9 331 61.0
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 1.4e-99 367.1 252 73.8
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 2.4e-99 366.3 330 65.2
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 5.4e-99 365.2 344 59.9
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 7.1e-99 364.8 328 62.2
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 1.2e-98 364.0 325 61.5
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 6.0e-98 361.7 326 60.4
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 7.8e-98 361.3 314 59.9
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 7.8e-98 361.3 308 63.6
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 2.3e-97 359.8 283 66.4
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 5.1e-97 358.6 278 67.3
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 5.1e-97 358.6 281 66.5
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 1.1e-96 357.5 292 69.2
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 3.3e-96 355.9 314 61.1
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 5.6e-96 355.1 322 60.2
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.1e-95 353.2 250 74.4
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 2.1e-95 353.2 306 61.8
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 2.1e-95 353.2 324 59.9
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 6.2e-95 351.7 323 60.1
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 8.1e-95 351.3 330 60.0
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 1.1e-94 350.9 290 64.8
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 1.4e-94 350.5 283 64.7
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 2.4e-94 349.7 283 63.6
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 3.1e-94 349.4 327 60.2
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 4.0e-94 349.0 280 63.9
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 6.9e-94 348.2 330 60.0
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 6.9e-94 348.2 330 60.0
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 9.0e-94 347.8 281 63.7
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 9.0e-94 347.8 264 68.2
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 1.5e-93 347.1 252 68.3
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.1e-90 336.7 332 56.6
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 3.5e-90 335.9 325 58.5
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 3.5e-90 335.9 283 62.9
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 2.5e-88 329.7 338 58.0
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.6e-87 325.9 267 62.5
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.1e-86 322.8 254 64.2
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.4e-85 319.3 254 63.8
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 1.7e-84 317.0 277 59.6
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 2.2e-84 316.6 293 59.4
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 1.1e-83 314.3 260 62.3
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 3.0e-81 306.2 271 59.8
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 1.3e-79 300.8 315 55.2
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.1e-78 297.7 291 57.0
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.9e-75 287.0 242 62.4
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 8.7e-73 278.1 255 58.4
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 8.7e-73 278.1 274 51.5
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.0e-68 264.6 254 57.1
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 1.1e-67 261.2 287 51.2
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 2.1e-66 256.9 278 49.3
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 4.5e-61 239.2 148 79.7
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.6e-58 230.7 239 49.8
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 2.7e-58 229.9 265 49.8
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 3.8e-52 209.5 221 51.1
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 1.3e-44 184.5 248 43.1
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 5.2e-25 119.4 122 54.9
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 2.8e-23 113.6 91 64.8
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 8.3e-23 112.1 249 34.1
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 5.7e-16 89.4 64 65.6
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 5.7e-16 89.4 64 65.6
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 2.0e-13 80.9 250 28.4


User provided reference genes

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