Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 0.0e+00 1209.1 607 100.0
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 0.0e+00 1200.3 607 99.3
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 0.0e+00 1160.6 607 97.0
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.1e-289 998.0 609 82.3
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 3.2e-286 988.0 642 77.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.4e-270 936.0 642 74.6
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.2e-216 756.9 636 61.3
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.2e-216 756.9 642 60.9
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.1e-213 746.1 612 61.4
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 2.1e-213 746.1 620 62.6
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 8.0e-213 744.2 642 60.3
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.8e-212 743.0 604 62.7
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.3e-210 736.9 643 59.9
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.7e-210 736.5 647 59.8
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.8e-210 735.7 623 59.7
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.7e-210 735.3 603 61.9
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 6.3e-210 734.6 642 60.3
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 5.9e-208 728.0 609 61.1
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.3e-207 726.9 622 59.0
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 3.2e-206 722.2 612 59.6
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.6e-203 712.6 619 57.4
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 3.7e-202 708.8 633 58.3
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 4.8e-202 708.4 618 58.4
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 4.8e-202 708.4 642 57.9
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.1e-201 707.2 635 58.1
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.4e-201 706.8 629 59.0
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.6e-200 703.4 647 57.8
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.6e-200 703.4 647 57.8
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 3.5e-200 702.2 608 59.7
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 3.5e-200 702.2 607 58.3
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.9e-199 699.1 650 56.9
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 5.0e-199 698.4 600 60.2
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.0e-199 698.4 649 56.7
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 6.5e-199 698.0 626 58.1
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.5e-199 697.6 652 56.3
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.9e-198 696.4 620 58.4
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 8.8e-196 687.6 611 57.8
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.7e-195 684.9 628 55.4
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.7e-194 683.3 640 55.3
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.2e-194 682.9 605 57.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.4e-193 680.2 607 56.3
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.8e-193 679.9 621 57.0
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 7.0e-193 677.9 615 56.7
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 9.1e-193 677.6 513 65.7
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 3.5e-192 675.6 615 56.9
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.7e-191 673.3 608 57.2
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.8e-191 672.2 528 64.4
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.9e-190 669.8 624 55.6
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.2e-189 667.2 636 55.5
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 2.1e-189 666.4 613 56.8
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.8e-189 666.0 613 55.8
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.0e-188 664.1 618 56.6
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.3e-188 662.9 618 56.0
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 3.0e-188 662.5 638 56.4
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 5.2e-188 661.8 618 56.6
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 5.2e-188 661.8 652 53.8
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 7.5e-187 657.9 628 54.3
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 3.7e-186 655.6 628 54.1
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.4e-185 652.9 610 55.6
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.2e-184 650.6 604 55.8
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.6e-184 650.2 613 55.1
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.7e-183 646.7 618 56.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 4.3e-182 642.1 614 53.9
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 4.0e-180 635.6 625 54.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 5.2e-180 635.2 458 71.8
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 1.7e-178 630.2 542 60.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.9e-178 629.4 609 54.5
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.1e-177 627.5 637 53.5
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.4e-177 625.2 614 51.5
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 6.0e-176 621.7 442 69.0
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 8.6e-175 617.8 608 53.3
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 2.5e-174 616.3 630 52.4
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 4.3e-174 615.5 543 58.6
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 7.0e-169 598.2 601 52.4
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-164 583.2 668 50.6
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.6e-163 579.7 482 59.5
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.6e-163 579.7 482 59.5
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 4.4e-163 578.9 550 54.7
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 2.2e-162 576.6 443 63.4
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 4.1e-161 572.4 457 62.6
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.5e-158 561.2 532 55.3
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 9.5e-158 561.2 528 55.9
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.8e-157 559.7 680 46.2
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.8e-157 559.7 593 50.6
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.2e-155 554.3 401 67.1
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 2.0e-155 553.5 625 48.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 2.9e-154 549.7 384 69.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 7.8e-152 541.6 458 56.8
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 3.0e-151 539.7 383 68.9
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.8e-141 505.8 392 63.5
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.8e-141 505.8 392 63.5
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.2e-141 505.4 522 51.9
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.4e-140 504.2 386 63.5
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.4e-140 503.4 387 64.6
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 2.0e-139 500.4 477 54.5
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.8e-138 496.1 515 52.6
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.3e-135 486.9 516 51.9
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.1e-135 485.7 456 54.4
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 6.7e-135 485.3 464 51.7
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.5e-134 483.4 537 48.8
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.1e-133 480.3 505 50.9
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.8e-131 472.2 464 53.4
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 1.0e-127 461.5 459 53.8
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.4e-124 450.3 463 52.5
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.2e-121 439.9 505 46.3
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.1e-116 424.9 479 46.8
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 4.5e-115 419.5 485 46.2
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 5.5e-113 412.5 406 53.4
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.4e-108 397.9 326 61.0
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.1e-108 396.4 517 41.8
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 6.1e-104 382.5 263 70.7
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.2e-101 372.1 464 42.7
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 6.3e-93 345.9 257 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.9e-90 337.0 498 38.8
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.1e-88 330.9 520 39.4
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.0e-87 328.6 305 53.1
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-87 327.4 323 54.2
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 8.5e-82 308.9 385 43.4
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.4e-79 301.6 276 54.0
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.9e-67 259.6 466 34.3
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.9e-65 254.6 200 60.0
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.1e-56 224.6 163 66.3
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 1.4e-47 195.3 256 48.4
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 2.2e-45 188.0 133 65.4
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.4e-45 186.4 194 45.4
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.1e-40 171.4 204 51.0
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.2e-37 161.4 243 41.6
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.4e-36 157.9 122 59.8
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.1e-35 154.8 122 59.0
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.8e-32 143.7 121 55.4
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 3.8e-29 134.0 139 52.5
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 9.6e-25 119.4 146 44.5
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.2e-22 112.5 220 34.5
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 3.8e-21 107.5 109 53.2
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-16 92.4 97 49.5
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.3e-15 87.0 72 54.2
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-13 81.6 76 52.6
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 4.6e-11 73.9 63 57.1
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 6.0e-11 73.6 102 42.2
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 3.0e-10 71.2 54 66.7


User provided reference genes

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