Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.5e-118 429.5 205 100.0
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.9e-118 429.1 205 99.5
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.5e-118 426.8 205 99.0
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.1e-108 396.7 205 91.7
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.5e-107 392.9 205 90.7
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.1e-105 386.7 205 89.8
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.4e-99 365.2 205 83.9
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.4e-97 359.0 205 82.4
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 3.2e-97 358.6 201 85.1
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 5.4e-97 357.8 205 82.4
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 7.1e-97 357.5 203 83.7
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.6e-96 356.3 207 82.6
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 3.5e-96 355.1 202 83.7
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 6.0e-96 354.4 205 80.5
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 7.8e-96 354.0 205 82.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.7e-95 352.8 198 84.3
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.7e-95 352.8 198 84.3
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 3.0e-95 352.1 202 83.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 3.9e-95 351.7 206 81.1
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 6.6e-95 350.9 205 81.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 6.6e-95 350.9 205 81.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 8.6e-95 350.5 204 80.9
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 8.6e-95 350.5 205 81.0
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.1e-94 350.1 201 80.1
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.5e-94 349.7 205 81.5
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.9e-94 349.4 206 81.1
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 4.3e-94 348.2 201 82.1
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 4.3e-94 348.2 202 81.2
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 5.6e-94 347.8 206 80.1
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 5.6e-94 347.8 203 81.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 7.3e-94 347.4 204 81.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 9.6e-94 347.1 205 80.0
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 9.6e-94 347.1 198 82.8
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 9.6e-94 347.1 205 82.0
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 1.6e-93 346.3 208 79.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.6e-93 346.3 202 82.2
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.1e-93 345.9 208 80.8
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 2.1e-93 345.9 205 81.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 78.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 80.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 3.6e-93 345.1 209 79.4
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.7e-93 344.7 205 79.5
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 6.2e-93 344.4 205 80.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.1e-92 343.6 199 80.4
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.1e-92 343.6 206 80.1
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.1e-92 343.6 205 80.0
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 79.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.8e-92 342.8 207 79.2
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.8e-92 342.8 205 80.5
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.4e-92 342.4 207 78.7
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 4.0e-92 341.7 198 81.3
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 4.0e-92 341.7 207 78.3
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 4.0e-92 341.7 206 81.1
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 5.2e-92 341.3 207 77.8
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.2e-91 340.1 200 80.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.5e-91 339.7 208 78.4
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.0e-91 339.3 201 80.6
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.6e-91 339.0 198 80.8
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.6e-91 339.0 206 77.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.4e-91 338.6 206 79.6
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.4e-91 338.6 200 80.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 3.4e-91 338.6 200 81.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 4.4e-91 338.2 210 77.1
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 4.4e-91 338.2 205 79.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.8e-91 337.8 197 82.2
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.2e-90 335.9 207 77.8
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.9e-90 335.5 205 77.1
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.8e-90 335.1 205 77.1
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 6.4e-90 334.3 201 77.6
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.9e-89 332.8 210 76.2
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.4e-89 332.4 195 80.0
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.4e-89 332.4 199 80.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.2e-89 332.0 197 81.2
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 7.1e-89 330.9 209 76.1
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 7.1e-89 330.9 205 77.1
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 9.3e-89 330.5 209 74.6
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.2e-88 330.1 210 75.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.1e-88 329.3 217 75.1
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.1e-88 329.3 197 80.2
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.1e-88 329.3 203 75.9
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.7e-88 328.9 199 78.9
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.7e-88 328.9 199 79.4
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.7e-88 328.9 211 75.4
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 6.0e-88 327.8 199 77.9
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 6.0e-88 327.8 198 79.8
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 7.8e-88 327.4 200 76.5
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.0e-87 327.0 198 79.3
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.3e-87 326.6 205 77.1
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.3e-87 326.6 205 77.1
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.3e-87 326.6 203 76.4
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 5.1e-87 324.7 227 68.7
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.5e-86 323.2 197 79.2
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.5e-86 322.4 203 78.8
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 4.3e-86 321.6 198 77.8
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 5.6e-86 321.2 198 77.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.3e-86 320.9 199 79.4
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.1e-85 319.3 199 78.9
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.8e-84 316.2 199 78.4
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.2e-83 313.5 193 75.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-81 307.0 183 79.8
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.0e-75 286.2 171 78.9
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 3.2e-73 278.9 198 68.2
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 4.6e-72 275.0 197 65.5
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.9e-70 269.6 159 81.8
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.8e-69 265.8 201 64.2
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.0e-66 257.3 161 75.8
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.4e-65 253.4 201 60.2
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 6.0e-64 248.1 150 78.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.8e-63 246.5 202 56.4
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 4.3e-62 241.9 200 58.5
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 9.6e-62 240.7 206 61.7
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.1e-61 239.6 206 61.2
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 8.2e-61 237.7 160 70.0
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.8e-58 228.8 144 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 6.5e-58 228.0 204 54.4
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.2e-57 225.3 134 80.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.9e-54 216.5 196 57.7
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 5.7e-54 214.9 145 75.2
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.4e-52 210.3 145 73.8
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 5.9e-51 204.9 119 82.4
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.0e-50 204.1 119 81.5
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.9e-50 202.6 124 75.0
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.7e-42 176.8 161 58.4
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 4.2e-41 172.2 97 79.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.0e-39 167.5 162 51.2
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 8.5e-34 147.9 95 75.8
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.7e-29 133.7 200 39.5
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 2.4e-28 129.8 207 44.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.5e-25 119.8 75 73.3
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.2e-25 119.4 100 60.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-23 114.4 79 69.6
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 4.1e-20 102.4 75 68.0
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 7.7e-19 98.2 60 73.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 6.3e-13 78.6 62 62.9
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 2.9e-10 69.7 38 84.2
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 4.7e-08 62.4 41 65.9
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 8.9e-07 58.2 36 75.0
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.5e-06 57.4 40 70.0


User provided reference genes

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