Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 5.8e-267 923.7 477 100.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.7e-266 921.0 477 99.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.6e-262 907.1 477 98.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.4e-233 812.0 477 87.2
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.6e-229 799.3 477 86.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 6.0e-224 780.8 486 83.3
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.5e-222 776.2 477 84.3
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.8e-210 734.9 484 78.5
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.8e-199 697.2 486 74.1
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.1e-196 687.2 490 73.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.5e-195 686.4 485 75.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 4.2e-193 678.3 489 73.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.2e-192 676.8 487 73.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.1e-192 676.0 492 71.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.4e-191 673.3 484 71.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.6e-190 669.1 486 72.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.7e-189 665.2 490 70.6
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.1e-188 662.1 485 73.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.1e-188 661.8 460 74.3
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.1e-188 661.8 460 74.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 4.1e-188 661.8 485 70.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.2e-187 660.2 484 69.6
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-187 659.1 490 70.2
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.8e-186 655.2 506 69.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.5e-185 653.3 486 70.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.5e-185 653.3 477 70.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-185 652.9 492 71.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.9e-185 652.9 501 70.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.6e-184 648.7 485 69.3
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.0e-183 647.1 489 69.5
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.0e-183 645.2 495 69.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.7e-182 641.3 484 67.4
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.3e-181 640.2 459 73.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-181 639.8 485 68.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.7e-181 638.6 489 69.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.7e-176 622.5 457 71.3
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 8.0e-176 620.9 417 76.5
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-175 620.2 486 66.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.0e-175 619.0 484 66.3
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.2e-175 618.2 484 65.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.4e-174 615.1 484 66.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.2e-173 612.8 484 64.9
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.2e-173 612.8 484 65.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.0e-171 606.3 484 66.1
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.9e-171 604.7 476 66.6
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.1e-169 600.5 489 64.6
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-169 600.5 470 67.2
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.2e-169 599.0 484 65.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.5e-169 598.2 515 61.9
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.2e-169 597.8 488 65.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.2e-168 597.0 489 64.0
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.6e-168 595.5 484 63.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.8e-167 593.2 491 64.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-167 593.2 486 63.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.3e-167 592.8 484 64.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-167 592.8 507 63.1
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.2e-167 591.7 499 64.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.8e-167 591.3 493 64.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 6.8e-167 591.3 499 64.5
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.4e-166 589.0 488 64.5
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 7.5e-166 587.8 494 64.4
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.3e-165 587.0 492 64.6
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.4e-164 583.6 486 63.2
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 9.2e-164 580.9 511 62.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.6e-163 580.1 485 64.7
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.9e-163 578.2 462 66.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 5.0e-162 575.1 497 63.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.6e-162 574.3 481 63.8
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.5e-161 573.5 499 63.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.9e-161 573.2 484 63.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.6e-161 571.6 494 64.2
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 7.3e-161 571.2 459 67.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.6e-160 568.9 488 62.9
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-159 567.4 499 63.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 5.2e-159 565.1 494 62.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.2e-159 565.1 490 62.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.2e-158 563.9 494 63.8
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.5e-158 563.5 490 61.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-158 563.1 490 62.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.4e-158 562.4 492 63.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.4e-158 562.0 492 63.6
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.2e-157 559.7 485 61.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 3.7e-157 558.9 430 70.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.9e-157 558.5 486 60.3
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.9e-157 558.5 443 67.3
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.4e-156 556.2 491 60.5
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 3.2e-156 555.8 405 70.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.0e-155 553.1 486 61.9
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.8e-155 551.2 507 61.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.3e-154 550.4 517 58.8
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.9e-154 548.9 464 62.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-153 547.4 478 60.5
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.3e-153 545.8 484 61.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 4.3e-153 545.4 444 64.6
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 7.3e-153 544.7 486 60.7
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 7.3e-153 544.7 586 53.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.6e-152 543.5 485 61.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.6e-152 542.3 486 60.5
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 8.0e-152 541.2 486 59.7
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.4e-151 540.4 489 59.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.8e-151 540.0 485 60.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.3e-151 539.7 477 60.6
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 6.8e-151 538.1 466 62.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.9e-151 537.7 490 60.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.4e-150 535.8 544 56.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.4e-150 535.4 493 60.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 2.9e-149 532.7 491 59.5
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 3.7e-149 532.3 490 59.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-147 525.4 486 58.6
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 6.0e-147 525.0 491 58.2
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 6.0e-147 525.0 509 57.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 7.8e-147 524.6 491 57.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.6e-146 521.5 532 55.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 8.6e-146 521.2 488 58.4
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.6e-146 521.2 532 55.8
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-145 519.6 485 58.6
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.8e-142 507.7 454 62.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-139 500.7 486 56.8
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.6e-139 500.4 484 57.9
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.9e-138 495.7 486 56.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-137 494.2 401 62.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-135 487.6 463 58.5
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 8.9e-135 484.6 452 56.9
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.2e-134 484.2 390 63.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.2e-131 474.2 482 55.8
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.3e-130 469.9 486 54.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 5.2e-127 458.8 498 54.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-122 444.5 484 52.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 5.8e-118 428.7 458 51.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.9e-116 423.7 479 51.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.2e-116 422.9 450 56.2
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-112 410.6 396 59.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.1e-107 393.7 491 51.1
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 8.1e-104 381.7 482 50.4
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-102 376.7 411 53.8
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.5e-99 366.3 348 58.3
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.5e-97 360.9 216 79.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.3e-97 359.8 450 44.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.3e-97 359.4 216 78.2
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.4e-95 353.6 410 51.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 5.9e-94 349.0 442 46.8
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.1e-92 344.7 373 51.5
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.0e-90 336.7 308 53.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.3e-87 325.9 341 50.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.8e-85 319.7 294 55.1
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 7.4e-81 305.4 222 64.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 5.2e-74 282.7 176 76.7
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.7e-64 250.0 308 50.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.3e-56 222.6 156 70.5
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 9.1e-55 218.8 216 58.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.7e-54 217.2 134 75.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.8e-48 197.2 268 46.6
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.4e-47 194.9 289 38.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.1e-39 168.7 228 50.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 3.0e-37 160.6 244 33.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 9.5e-36 155.6 190 40.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.1e-31 142.1 95 66.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 5.2e-26 123.2 76 73.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.5e-25 121.7 118 60.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.7e-24 118.2 70 75.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 8.1e-19 99.4 60 76.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 4.4e-17 93.6 114 50.9
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 9.9e-17 92.4 233 27.5
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.6e-12 75.9 80 50.0
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 3.6e-11 73.9 43 79.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.6e-09 67.8 74 47.3
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.9e-07 61.6 71 40.8
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.2e-07 60.8 59 54.2


User provided reference genes

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