Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G217100 Gossypium raimondii HOM05D008098 ORTHO05D009893 3.0e-63 245.0 119 100.0
Gohir.A08G186800 Gossypium hirsutum HOM05D008098 ORTHO05D009893 3.6e-61 238.0 117 98.3
Gohir.D08G205000 Gossypium hirsutum HOM05D008098 ORTHO05D009893 1.8e-60 235.7 115 99.1
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 8.2e-29 130.6 121 56.2
COL.COLO4_11875 Corchorus olitorius HOM05D008098 ORTHO05D009893 6.9e-28 127.5 132 53.0
Thecc.01G274000 Theobroma cacao HOM05D008098 ORTHO05D009893 6.7e-15 84.3 77 58.4
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 2.2e-10 69.3 113 35.4
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 2.9e-10 68.9 117 40.2
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 1.1e-09 67.0 131 35.1
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 1.4e-09 66.6 122 40.2
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.4e-07 60.1 141 36.9
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 3.0e-07 58.9 144 34.0
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 3.0e-07 58.9 120 35.8
PSO386G0242 Papaver somniferum HOM05D000690 ORTHO05D002679 3.0e-07 58.9 85 38.8
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 3.0e-07 58.9 49 57.1
MSTRG.4954 Avicennia marina HOM05D000562 ORTHO05D000388 5.1e-07 58.2 49 57.1
EL10Ac8g18999 Beta vulgaris HOM05D000690 ORTHO05D002679 5.1e-07 58.2 73 42.5
Nitab4.5_0001565g0010 Nicotiana tabacum HOM05D000690 ORTHO05D002679 5.1e-07 58.2 78 41.0
CiPaw.13G022400 Carya illinoinensis HOM05D000562 ORTHO05D000388 6.7e-07 57.8 52 53.8
Oeu028047.1 Olea europaea HOM05D000562 ORTHO05D000388 6.7e-07 57.8 60 41.7
Cfa011029 Carpinus fangiana HOM05D000562 ORTHO05D000388 8.8e-07 57.4 52 51.9
Ciclev10023758m.g Citrus clementina HOM05D000562 ORTHO05D000388 8.8e-07 57.4 56 50.0
DCAR_009045 Daucus carota HOM05D000690 ORTHO05D002679 8.8e-07 57.4 53 54.7
ECA233G4098 Erigeron canadensis HOM05D000562 ORTHO05D000388 8.8e-07 57.4 48 60.4
PSO724G1067 Papaver somniferum HOM05D000690 ORTHO05D002679 8.8e-07 57.4 51 54.9
Nitab4.5_0006135g0010 Nicotiana tabacum HOM05D000562 ORTHO05D000388 1.1e-06 57.0 49 57.1
Rhsim07G0120400 Rhododendron simsii HOM05D000562 ORTHO05D000388 1.1e-06 57.0 47 59.6
PGSC0003DMG400025721 Solanum tuberosum HOM05D000690 ORTHO05D002679 1.1e-06 57.0 73 41.1
Aa31LG6G420 Aethionema arabicum HOM05D000562 ORTHO05D000388 1.5e-06 56.6 47 57.4
AL8G11170 Arabidopsis lyrata HOM05D000562 ORTHO05D000388 1.5e-06 56.6 49 55.1
C04p05650 Brassica napus HOM05D000562 ORTHO05D000388 1.5e-06 56.6 52 50.0
BolC4t22194H Brassica oleracea HOM05D000562 ORTHO05D000388 1.5e-06 56.6 52 50.0
Carub.0008s0076 Capsella rubella HOM05D000562 ORTHO05D000388 1.5e-06 56.6 49 55.1
CARHR174340 Cardamine hirsuta HOM05D000562 ORTHO05D000388 1.5e-06 56.6 49 55.1
DCAR_008309 Daucus carota HOM05D000562 ORTHO05D000388 1.5e-06 56.6 49 55.1
Nn6g35673 Nelumbo nucifera HOM05D000690 ORTHO05D002679 1.5e-06 56.6 72 41.7
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 1.5e-06 56.6 116 32.8
arahy.Tifrunner.gnm1.ann1.G5ZJAX Arachis hypogaea HOM05D000562 ORTHO05D000388 2.0e-06 56.2 53 52.8
Cc00_g00160 Coffea canephora HOM05D000690 ORTHO05D000388 2.0e-06 56.2 53 52.8
HanXRQChr06g0167191 Helianthus annuus HOM05D000562 ORTHO05D000388 2.0e-06 56.2 49 55.1
Lj5A749T42 Lonicera japonica HOM05D000690 ORTHO05D002679 2.0e-06 56.2 45 60.0
Lj5A765T48 Lonicera japonica HOM05D000690 ORTHO05D002679 2.0e-06 56.2 45 60.0
MBI19_g29875_MAGBIO Magnolia biondii HOM05D000690 ORTHO05D002679 2.0e-06 56.2 71 40.8
Nitab4.5_0001255g0070 Nicotiana tabacum HOM05D000562 ORTHO05D000388 2.0e-06 56.2 49 57.1
VMungo1309G2562 Vigna mungo HOM05D000562 ORTHO05D000388 2.0e-06 56.2 64 46.9
Aa31LG1G26210 Aethionema arabicum HOM05D000562 ORTHO05D000388 2.6e-06 55.8 52 51.9
Aqoxy7G02612 Aquilegia oxysepala HOM05D000690 ORTHO05D002679 2.6e-06 55.8 69 43.5
MSTRG.4958 Avicennia marina HOM05D000562 ORTHO05D000388 2.6e-06 55.8 51 52.9
A05p04820 Brassica napus HOM05D000562 ORTHO05D000388 2.6e-06 55.8 52 50.0
BraA05t19457Z Brassica rapa HOM05D000562 ORTHO05D000388 2.6e-06 55.8 52 50.0
DCAR_020463 Daucus carota HOM05D000690 ORTHO05D002679 2.6e-06 55.8 57 50.9
Lj3g0004701 Lotus japonicus HOM05D000562 ORTHO05D000388 2.6e-06 55.8 53 50.9
Lalb_Chr13g0303521 Lupinus albus HOM05D000562 ORTHO05D000388 2.6e-06 55.8 52 46.2
Nitab4.5_0000024g0310 Nicotiana tabacum HOM05D000690 ORTHO05D002679 2.6e-06 55.8 55 50.9
Peaxi162Scf00418g00036 Petunia axillaris HOM05D000690 ORTHO05D002679 2.6e-06 55.8 76 42.1
Aa31LG9G5920 Aethionema arabicum HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 3.3e-06 55.5 48 52.1
AT5G47060 Arabidopsis thaliana HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
BcaC06g34288 Brassica carinata HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
C07p30750 Brassica napus HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
BolC7t43618H Brassica oleracea HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 3.3e-06 55.5 148 34.5
Dinv12609 Davidia involucrata HOM05D000690 ORTHO05D002679 3.3e-06 55.5 57 47.4
Thhalv10001043m.g Eutrema salsugineum HOM05D000562 ORTHO05D000388 3.3e-06 55.5 49 53.1
Manes.03G042600 Manihot esculenta HOM05D000690 ORTHO05D002679 3.3e-06 55.5 59 49.2
Oeu025292.1 Olea europaea HOM05D000690 ORTHO05D002679 3.3e-06 55.5 78 39.7
Peaxi162Scf00533g00815 Petunia axillaris HOM05D000690 ORTHO05D002679 3.3e-06 55.5 76 35.5
PGR031G2443 Punica granatum HOM05D000562 ORTHO05D000388 3.3e-06 55.5 48 56.2
Sc08g0009030 Simmondsia chinensis HOM05D000690 ORTHO05D002679 3.3e-06 55.5 72 43.1
Solyc07g042190.3 Solanum lycopersicum HOM05D000690 ORTHO05D002679 3.3e-06 55.5 73 39.7
Sopen07g021800 Solanum pennellii HOM05D000690 ORTHO05D002679 3.3e-06 55.5 73 39.7
Thecc.09G195800 Theobroma cacao HOM05D000690 ORTHO05D002679 3.3e-06 55.5 62 48.4
TAR626G1114 Trochodendron aralioides HOM05D000690 ORTHO05D002679 3.3e-06 55.5 76 42.1
VMungo0331G1744 Vigna mungo HOM05D000562 ORTHO05D000388 3.3e-06 55.5 53 50.9
Atru.chr7.957 Acer truncatum HOM05D000690 ORTHO05D002679 4.4e-06 55.1 56 50.0
arahy.Tifrunner.gnm1.ann1.01RPY8 Arachis hypogaea HOM05D000562 ORTHO05D000388 4.4e-06 55.1 53 50.9
MSTRG.4955 Avicennia marina HOM05D000562 ORTHO05D000388 4.4e-06 55.1 51 51.0
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 4.4e-06 55.1 130 32.3
BcaB02g08846 Brassica carinata HOM05D000562 ORTHO05D000388 4.4e-06 55.1 60 46.7
Cfa002961 Carpinus fangiana HOM05D000690 ORTHO05D002679 4.4e-06 55.1 72 41.7
Haze_02896 Corylus avellana HOM05D000562 ORTHO05D000388 4.4e-06 55.1 52 50.0
FvH4_7g08920 Fragaria vesca HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
FAN01G1463 Fragaria x ananassa HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
FAN03G1369 Fragaria x ananassa HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
FAN06G1495 Fragaria x ananassa HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
FAN10G1258 Fragaria x ananassa HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
FAN10G2638 Fragaria x ananassa HOM05D000562 ORTHO05D000388 4.4e-06 55.1 67 43.3
Nitab4.5_0000506g0230 Nicotiana tabacum HOM05D000562 ORTHO05D000388 4.4e-06 55.1 69 44.9
Oeu028824.2 Olea europaea HOM05D000690 ORTHO05D002679 4.4e-06 55.1 54 55.6
Sed0019501 Sechium edule HOM05D000562 ORTHO05D000388 4.4e-06 55.1 47 53.2
TAR383G0298 Trochodendron aralioides HOM05D000690 ORTHO05D002679 4.4e-06 55.1 81 40.7
HPP92_010800 Vanilla planifolia HOM05D000690 ORTHO05D000388 4.4e-06 55.1 62 50.0
BcaNung06930 Brassica carinata HOM05D000562 ORTHO05D000388 5.7e-06 54.7 46 56.5
A03p50600 Brassica napus HOM05D000562 ORTHO05D000388 5.7e-06 54.7 46 56.5
C07p48920 Brassica napus HOM05D000562 ORTHO05D000388 5.7e-06 54.7 46 56.5
BolC7t45400H Brassica oleracea HOM05D000562 ORTHO05D000388 5.7e-06 54.7 46 56.5
BraA03t14150Z Brassica rapa HOM05D000562 ORTHO05D000388 5.7e-06 54.7 46 56.5
CSS0008093 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 5.7e-06 54.7 48 54.2
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 5.7e-06 54.7 119 34.5
Thhalv10001797m.g Eutrema salsugineum HOM05D000562 ORTHO05D000388 5.7e-06 54.7 52 50.0
HanXRQChr10g0309571 Helianthus annuus HOM05D000690 ORTHO05D002679 5.7e-06 54.7 51 54.9
Manes.16G093000 Manihot esculenta HOM05D000690 ORTHO05D002679 5.7e-06 54.7 57 47.4
Nitab4.5_0009109g0030 Nicotiana tabacum HOM05D000690 ORTHO05D002679 5.7e-06 54.7 78 39.7
Sp4g26750 Schrenkiella parvula HOM05D000562 ORTHO05D000388 5.7e-06 54.7 52 50.0
TPR.G27482 Trifolium pratense HOM05D000562 ORTHO05D000388 5.7e-06 54.7 75 41.3
vmacro17108 Vaccinium macrocarpon HOM05D000690 ORTHO05D002679 5.7e-06 54.7 51 52.9
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 5.7e-06 54.7 79 39.2
AT4G17670 Arabidopsis thaliana HOM05D000562 ORTHO05D000388 7.4e-06 54.3 48 54.2
BcaB06g29392 Brassica carinata HOM05D000562 ORTHO05D000388 7.4e-06 54.3 49 51.0
BcaC03g16929 Brassica carinata HOM05D000562 ORTHO05D000388 7.4e-06 54.3 69 43.5
BcaC06g31419 Brassica carinata HOM05D000562 ORTHO05D000388 7.4e-06 54.3 49 53.1
C02p48310 Brassica napus HOM05D000562 ORTHO05D000388 7.4e-06 54.3 69 43.5
C09p05110 Brassica napus HOM05D000562 ORTHO05D000388 7.4e-06 54.3 75 40.0
BolC2t10863H Brassica oleracea HOM05D000562 ORTHO05D000388 7.4e-06 54.3 69 43.5
Carub.0007s2371 Capsella rubella HOM05D000562 ORTHO05D000388 7.4e-06 54.3 48 54.2
CARHR224390 Cardamine hirsuta HOM05D000562 ORTHO05D000388 7.4e-06 54.3 46 56.5
Ca_26023_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 7.4e-06 54.3 67 44.8
Ca_30450_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 7.4e-06 54.3 67 44.8
Cc08_g01560 Coffea canephora HOM05D000562 ORTHO05D000388 7.4e-06 54.3 49 53.1
Glyma.07G117300 Glycine max HOM05D000562 ORTHO05D000388 7.4e-06 54.3 53 50.9
Nitab4.5_0000506g0200 Nicotiana tabacum HOM05D000562 ORTHO05D000388 7.4e-06 54.3 99 34.3
PSO210G5237 Papaver somniferum HOM05D000562 ORTHO05D000388 7.4e-06 54.3 77 42.9
PSO421G0213 Papaver somniferum HOM05D000690 ORTHO05D002679 7.4e-06 54.3 47 53.2
PSO421G0334 Papaver somniferum HOM05D000690 ORTHO05D002679 7.4e-06 54.3 47 53.2
Hund26063 Selenicereus undatus HOM05D000690 ORTHO05D002679 7.4e-06 54.3 58 51.7
PGSC0003DMG400009560 Solanum tuberosum HOM05D000690 ORTHO05D002679 7.4e-06 54.3 49 57.1
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 7.4e-06 54.3 47 48.9
Actinidia07569 Actinidia chinensis HOM05D000690 ORTHO05D002679 9.7e-06 53.9 60 53.3
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 9.7e-06 53.9 49 51.0
Actinidia25930 Actinidia chinensis HOM05D000562 ORTHO05D000388 9.7e-06 53.9 93 36.6
AL7G36920 Arabidopsis lyrata HOM05D000562 ORTHO05D000388 9.7e-06 53.9 46 56.5
CSS0019997 Camellia sinensis var. sinensis HOM05D000690 ORTHO05D002679 9.7e-06 53.9 57 45.6
ECA246G3315 Erigeron canadensis HOM05D000562 ORTHO05D000388 9.7e-06 53.9 49 55.1
Thhalv10026417m.g Eutrema salsugineum HOM05D000562 ORTHO05D000388 9.7e-06 53.9 46 56.5
Glyma.03G105400 Glycine max HOM05D000562 ORTHO05D000388 9.7e-06 53.9 52 51.9
Lsat_1_v5_gn_5_81400 Lactuca sativa HOM05D000690 ORTHO05D002679 9.7e-06 53.9 51 52.9
Lj4g0001416 Lotus japonicus HOM05D000562 ORTHO05D000388 9.7e-06 53.9 70 44.3
Lalb_Chr07g0195201 Lupinus albus HOM05D000562 ORTHO05D000388 9.7e-06 53.9 52 50.0
Peaxi162Scf00084g00028 Petunia axillaris HOM05D000562 ORTHO05D000388 9.7e-06 53.9 51 52.9
Psat2g174160 Pisum sativum HOM05D000562 ORTHO05D000388 9.7e-06 53.9 48 54.2
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 9.7e-06 53.9 80 36.2
RcHm_v2.0_Chr1g0344361 Rosa chinensis HOM05D000562 ORTHO05D000388 9.7e-06 53.9 67 41.8
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 9.7e-06 53.9 126 32.5
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 9.7e-06 53.9 49 53.1


User provided reference genes

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