Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 7.6e-180 634.0 400 100.0
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-130 470.7 446 77.1
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 4.3e-122 442.2 408 77.2
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.9e-118 429.5 412 73.8
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-117 427.2 401 76.6
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.3e-114 414.8 420 71.7
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 7.3e-114 414.8 420 71.7
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 3.6e-113 412.5 397 60.7
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-112 411.0 411 72.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.4e-110 401.7 421 67.9
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.7e-102 377.1 392 53.6
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.2e-100 370.9 402 52.5
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.7e-100 369.8 399 51.1
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.3e-99 366.7 400 52.2
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 6.6e-99 365.2 397 52.6
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.8e-97 359.8 432 63.7
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 8.1e-97 358.2 405 51.1
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 1.1e-96 357.8 385 52.2
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.1e-96 356.3 408 51.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.0e-96 355.9 399 50.9
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 9.9e-95 351.3 452 64.4
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.7e-94 350.5 393 51.4
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 8.4e-94 348.2 399 50.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.4e-94 348.2 397 50.1
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.9e-93 347.1 414 50.0
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.9e-93 347.1 400 50.5
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.4e-93 346.7 428 63.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.2e-93 345.9 402 50.5
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 5.4e-93 345.5 420 61.7
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 5.4e-93 345.5 404 59.7
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.2e-92 344.4 405 49.6
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.6e-92 344.0 420 61.0
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 5.1e-91 339.0 400 50.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 5.6e-90 335.5 448 60.0
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.6e-89 334.0 397 48.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 1.1e-88 331.3 401 58.1
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.1e-88 331.3 385 50.6
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 2.4e-88 330.1 395 64.1
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 3.1e-88 329.7 412 59.7
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 4.4e-87 325.9 447 45.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.3e-86 324.3 408 61.5
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 2.9e-86 323.2 482 55.4
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 2.4e-85 320.1 397 48.4
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 3.2e-85 319.7 440 59.5
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 4.2e-85 319.3 465 57.4
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 7.1e-85 318.5 372 49.2
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.2e-84 317.8 400 47.2
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.6e-84 317.4 466 56.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.7e-84 316.6 400 52.0
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.7e-84 316.6 395 47.3
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 7.9e-84 315.1 467 52.5
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 5.1e-83 312.4 434 58.8
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.1e-82 311.2 391 51.9
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 7.4e-82 308.5 391 45.3
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 7.4e-82 308.5 406 57.9
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 2.1e-81 307.0 401 48.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.1e-81 307.0 402 61.2
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.1e-80 304.7 400 47.5
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.4e-80 304.3 392 46.9
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.8e-80 303.9 411 46.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.1e-80 303.1 446 55.4
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 6.9e-80 302.0 388 47.7
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.5e-79 300.8 426 49.3
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 3.4e-79 299.7 351 49.3
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 3.4e-79 299.7 414 47.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.5e-79 299.3 404 54.2
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.7e-78 297.4 390 47.7
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 4.9e-78 295.8 400 44.2
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.4e-77 294.3 458 54.6
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 7.1e-77 292.0 465 58.7
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.3e-77 291.6 450 55.3
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.6e-76 290.8 490 52.0
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.6e-76 290.8 396 56.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.7e-76 290.0 396 54.5
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 6.0e-76 288.9 458 54.4
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 7.9e-76 288.5 468 53.6
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 5.1e-75 285.8 396 54.3
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.1e-74 284.6 479 50.5
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 1.5e-74 284.3 410 53.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 2.1e-73 280.4 347 47.6
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 2.8e-73 280.0 420 51.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.8e-73 280.0 459 53.4
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 2.8e-73 280.0 363 48.2
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 4.8e-73 279.3 355 46.8
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 8.1e-73 278.5 497 50.3
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.8e-72 277.3 420 51.7
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.0e-72 276.2 406 44.3
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 6.9e-72 275.4 397 43.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.2e-71 274.6 395 50.1
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.2e-71 274.6 395 50.1
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 5.8e-71 272.3 422 55.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.0e-70 271.6 412 58.5
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.7e-70 270.8 141 98.6
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 2.9e-70 270.0 394 43.7
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 8.4e-70 268.5 397 53.4
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.2e-69 266.5 414 56.8
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.1e-68 263.8 395 54.7
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 5.7e-66 255.8 547 44.2
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 9.6e-66 255.0 549 43.4
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.1e-65 253.8 441 50.8
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.4e-64 251.1 406 54.7
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 5.3e-64 249.2 406 44.6
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 6.9e-64 248.8 403 40.0
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-63 247.3 401 40.9
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 7.6e-63 245.4 353 62.3
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.9e-62 243.4 390 43.1
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.5e-62 242.3 469 49.5
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.5e-62 242.3 469 49.5
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.9e-61 240.7 408 52.9
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 7.2e-61 238.8 371 39.9
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 4.6e-60 236.1 463 37.8
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 3.9e-59 233.0 380 40.0
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 6.7e-59 232.3 418 49.5
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.5e-58 231.1 393 40.5
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.4e-58 228.8 445 49.4
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 8.2e-57 225.3 342 51.2
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 3.8e-54 216.5 123 87.8
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 3.0e-51 206.8 367 47.1
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 4.1e-48 196.4 346 48.6
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 8.5e-46 188.7 409 35.0
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.5e-45 186.0 393 36.6
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.9e-43 179.9 135 68.1
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 4.1e-40 169.9 154 61.0
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 4.2e-37 159.8 268 41.8
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 6.7e-35 152.5 416 39.7
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.0e-28 129.0 74 83.8
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 1.0e-27 128.6 94 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 5.4e-24 116.3 359 31.8
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 2.9e-22 110.5 116 51.7
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.6e-18 97.4 109 49.5
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.7e-14 84.7 93 51.6
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.8e-12 77.4 102 40.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.4e-11 75.1 66 54.5


User provided reference genes

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