Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-131 473.0 230 100.0
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.4e-115 417.2 236 88.1
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.9e-111 406.0 248 83.5
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.2e-100 370.2 238 79.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.3e-91 340.1 243 70.0
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.6e-89 332.0 328 60.7
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.3e-86 323.6 239 67.8
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 5.5e-82 308.1 238 65.1
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.1e-77 292.4 225 69.8
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.0e-72 275.8 154 85.7
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 3.8e-67 258.8 243 55.6
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 5.0e-67 258.5 246 52.4
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.5e-66 256.1 213 55.9
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 2.8e-65 252.7 236 53.4
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 7.5e-63 244.6 240 50.8
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 3.7e-62 242.3 236 51.7
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 6.3e-62 241.5 250 50.8
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 8.3e-62 241.1 241 51.0
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 1.8e-61 240.0 211 55.0
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 2.4e-61 239.6 238 51.3
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 9.2e-61 237.7 236 51.7
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.6e-60 236.9 248 52.0
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 2.7e-60 236.1 229 53.3
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 2.7e-60 236.1 227 53.7
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.8e-60 234.6 248 51.6
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.0e-59 234.2 237 49.4
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 2.3e-59 233.0 241 49.4
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 2.9e-59 232.6 252 50.8
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 5.0e-59 231.9 240 48.3
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 1.5e-58 230.3 239 52.3
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.9e-58 229.9 248 47.2
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 2.8e-57 226.1 235 49.4
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.6e-57 225.7 237 47.7
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.8e-56 223.4 237 48.5
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 4.4e-55 218.8 232 47.4
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 3.7e-54 215.7 223 57.0
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-53 214.2 247 46.6
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.1e-53 214.2 218 53.7
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 9.2e-53 211.1 246 45.5
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 3.5e-52 209.1 228 46.5
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 7.8e-52 208.0 225 49.8
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.7e-51 206.8 240 45.0
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 2.3e-51 206.5 240 45.8
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 2.3e-51 206.5 246 44.7
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 2.3e-51 206.5 210 49.0
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 3.9e-51 205.7 238 45.4
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 6.6e-51 204.9 242 45.0
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 8.6e-51 204.5 250 44.8
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.1e-50 204.1 240 44.6
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.5e-50 203.8 236 47.0
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.5e-50 203.8 240 45.0
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.9e-50 203.4 231 47.6
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 4.3e-50 202.2 241 46.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 5.6e-50 201.8 240 44.2
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 5.6e-50 201.8 218 46.3
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 9.5e-50 201.1 241 44.0
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 1.2e-49 200.7 240 44.6
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.6e-49 200.3 246 43.9
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.1e-49 199.9 211 48.8
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 2.8e-49 199.5 241 44.8
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 2.8e-49 199.5 241 44.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 4.7e-49 198.7 239 43.5
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 4.7e-49 198.7 240 44.6
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.4e-48 197.2 239 44.8
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 4.0e-48 195.7 219 44.3
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 8.9e-48 194.5 252 42.1
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.2e-47 194.1 217 44.2
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.5e-47 193.7 217 44.2
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 1.5e-47 193.7 211 47.4
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.6e-47 193.0 211 45.5
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.4e-47 192.2 94 95.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 7.5e-47 191.4 227 43.2
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.3e-46 190.7 252 40.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 6.4e-46 188.3 223 43.9
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 6.4e-46 188.3 119 69.7
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.1e-45 187.6 212 46.7
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 1.2e-44 184.1 248 40.3
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.1e-44 183.3 231 41.6
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 7.8e-44 181.4 213 44.1
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.0e-43 181.0 245 40.4
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.0e-43 181.0 224 42.4
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.7e-43 180.3 249 43.0
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 6.6e-43 178.3 252 39.3
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 5.6e-42 175.3 235 39.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 4.7e-41 172.2 248 41.1
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 8.1e-41 171.4 231 42.9
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 3.1e-40 169.5 250 40.8
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.1e-40 169.5 248 40.7
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 2.6e-39 166.4 242 40.5
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.4e-39 165.6 242 40.9
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 1.7e-38 163.7 239 37.7
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 2.9e-38 162.9 232 40.5
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.3e-35 154.1 229 38.9
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.3e-35 153.3 158 55.7
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 1.1e-34 151.0 222 40.5
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-33 147.5 84 91.7
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.6e-33 147.1 84 91.7
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 3.6e-33 146.0 218 39.9
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.7e-33 145.6 84 90.5
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.7e-33 145.6 84 90.5
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-32 144.4 76 88.2
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.8e-32 143.7 74 90.5
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 2.4e-32 143.3 227 36.6
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 4.4e-31 139.0 224 37.1
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 2.2e-30 136.7 217 36.9
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 7.3e-26 121.7 107 47.7
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 2.4e-24 116.7 109 47.7
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 4.9e-22 109.0 59 88.1
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 8.4e-22 108.2 174 39.7
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 7.1e-21 105.1 224 26.8
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 4.6e-20 102.4 229 30.6
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.1e-18 97.8 114 42.1
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 3.3e-18 96.3 121 48.8
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 3.1e-16 89.7 218 27.1
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 6.9e-16 88.6 86 53.5
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.9e-14 83.2 164 29.3
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 9.3e-13 78.2 60 56.7
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 3.3e-10 69.7 48 54.2
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 6.9e-08 62.0 76 40.8
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 9.0e-08 61.6 71 35.2


User provided reference genes

Program Settings