Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.2e-145 518.1 277 100.0
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.6e-144 515.0 277 99.3
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 4.4e-118 428.3 243 93.0
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 3.7e-72 275.8 325 57.2
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 8.4e-69 264.6 301 58.8
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.7e-59 233.0 197 69.0
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 1.3e-56 224.2 184 68.5
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.3e-56 224.2 196 69.4
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 3.7e-56 222.6 185 69.2
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.7e-56 222.6 287 54.0
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.4e-55 220.7 293 51.9
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.4e-55 220.7 290 52.1
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 5.3e-55 218.8 184 67.9
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 9.0e-55 218.0 275 52.7
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.2e-54 217.6 191 64.9
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.5e-54 217.2 284 52.1
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 7.7e-54 214.9 285 54.7
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 2.2e-53 213.4 184 66.8
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 5.0e-53 212.2 213 61.0
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 1.1e-52 211.1 175 68.6
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 9.4e-52 208.0 291 49.1
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 2.1e-51 206.8 254 52.8
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.7e-51 206.5 183 64.5
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 2.7e-51 206.5 183 66.1
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.1e-51 205.3 183 65.0
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 7.9e-51 204.9 168 66.1
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.0e-50 204.5 148 75.0
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.0e-50 204.5 259 51.7
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.0e-50 204.5 292 49.3
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.8e-50 203.8 168 67.9
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.8e-50 203.8 187 63.1
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 2.3e-50 203.4 196 62.8
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 3.0e-50 203.0 265 52.8
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 3.9e-50 202.6 167 67.7
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 5.1e-50 202.2 284 48.9
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.1e-50 202.2 183 64.5
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 5.1e-50 202.2 188 63.8
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 1.1e-49 201.1 185 62.2
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.5e-49 200.7 262 52.7
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.6e-49 199.9 261 52.1
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 2.6e-49 199.9 256 49.6
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 3.3e-49 199.5 215 56.3
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 7.4e-49 198.4 255 49.4
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 2.2e-48 196.8 185 60.5
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 4.8e-48 195.7 161 67.1
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 2.4e-47 193.4 279 47.0
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 9.1e-47 191.4 278 46.8
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.5e-46 190.7 258 50.0
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.5e-46 190.7 286 47.2
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.6e-46 189.9 279 47.3
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.4e-46 189.5 180 62.8
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.4e-46 189.5 177 61.0
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 7.7e-46 188.3 215 55.3
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.0e-45 188.0 271 46.1
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.3e-45 187.6 176 60.8
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.2e-45 186.8 175 60.0
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.8e-45 186.0 193 56.5
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 8.5e-45 184.9 275 45.5
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.1e-44 184.5 267 49.4
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.4e-44 184.1 191 56.0
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.4e-44 184.1 269 49.4
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 3.2e-44 183.0 258 50.8
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 4.2e-44 182.6 181 58.0
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 4.2e-44 182.6 181 58.0
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 7.2e-44 181.8 194 55.7
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 9.4e-44 181.4 193 56.5
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.2e-43 181.0 205 54.1
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.6e-43 180.6 184 57.6
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 2.1e-43 180.3 191 55.0
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 2.1e-43 180.3 191 55.0
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 2.7e-43 179.9 168 60.1
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 6.1e-43 178.7 252 49.6
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 7.9e-43 178.3 245 50.2
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.0e-42 176.4 141 68.8
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 6.7e-42 175.3 228 49.1
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.1e-41 174.5 233 49.4
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.5e-41 174.1 177 58.8
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 7.4e-41 171.8 184 54.3
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 9.7e-41 171.4 244 48.4
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.3e-40 171.0 235 47.2
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 2.2e-40 170.2 156 62.2
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 8.2e-40 168.3 244 47.5
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.8e-39 167.2 194 53.6
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.6e-38 164.1 229 49.3
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.6e-38 163.3 189 52.9
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 3.5e-38 162.9 188 53.7
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.0e-37 161.4 169 55.6
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.1e-36 157.9 245 47.3
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.6e-35 154.1 138 63.8
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 8.0e-35 151.8 119 70.6
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.0e-34 151.4 119 70.6
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.0e-34 151.4 194 48.5
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.4e-34 151.0 136 61.8
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 2.3e-34 150.2 119 69.7
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 7.5e-33 145.2 119 69.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 9.1e-31 138.3 172 48.3
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-29 134.8 127 59.8
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.3e-29 134.4 157 47.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 2.2e-29 133.7 206 46.6
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 3.8e-29 132.9 186 44.1
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 6.5e-29 132.1 119 62.2
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 2.1e-27 127.1 118 60.2
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 2.6e-25 120.2 146 53.4
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 1.2e-17 94.7 120 41.7
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 2.0e-17 94.0 220 38.6
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.8e-15 87.4 275 30.2
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 5.4e-15 85.9 89 53.9
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.0e-15 85.5 70 61.4
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 4.3e-12 76.3 151 38.4
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.7e-11 72.8 88 55.7
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 3.0e-10 70.1 51 74.5
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 3.4e-09 66.6 128 43.8
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 2.7e-06 57.0 175 29.7
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.6e-06 56.2 166 31.9


User provided reference genes

Program Settings