Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.1e-66 254.2 124 100.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.1e-66 254.2 124 100.0
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 7.2e-28 127.5 115 60.9
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.6e-25 119.0 127 59.8
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.7e-22 109.0 99 56.6
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.9e-22 107.8 99 56.6
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.7e-21 106.3 99 55.6
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.6e-19 98.6 121 47.1
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.7e-19 98.2 122 45.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.7e-19 98.2 121 47.1
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 4.7e-19 98.2 122 44.3
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 6.1e-19 97.8 121 46.3
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 6.1e-19 97.8 122 47.5
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.2e-18 94.7 121 45.5
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.2e-17 93.6 123 44.7
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.0e-17 92.8 108 50.0
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 2.8e-16 89.0 102 51.0
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 4.8e-16 88.2 118 42.4
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.7e-14 82.4 105 45.7
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.5e-14 82.0 103 46.6
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 4.5e-14 81.6 106 44.3
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.7e-13 79.7 114 42.1
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.7e-13 79.7 96 44.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 2.2e-13 79.3 113 45.1
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 3.8e-13 78.6 102 51.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 8.5e-13 77.4 100 45.0
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.5e-12 76.6 94 46.8
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.9e-12 76.3 75 53.3
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.9e-12 76.3 62 62.9
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.9e-12 76.3 112 38.4
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.9e-12 76.3 108 38.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.5e-12 75.9 113 42.5
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.2e-12 75.5 100 43.0
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 5.5e-12 74.7 116 40.5
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 7.2e-12 74.3 105 42.9
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 7.2e-12 74.3 120 41.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 9.4e-12 73.9 117 42.7
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.2e-11 73.6 102 40.2
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.6e-11 73.2 104 39.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.1e-11 72.8 88 43.2
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.7e-11 72.4 56 60.7
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 3.6e-11 72.0 94 43.6
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.7e-11 71.6 111 39.6
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 6.1e-11 71.2 102 39.2
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 6.1e-11 71.2 102 39.2
Gohir.A11G095550 Gossypium hirsutum HOM05D066925 ORTHO05D047563 6.1e-11 71.2 120 42.5
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 8.0e-11 70.9 37 81.1
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 8.0e-11 70.9 128 37.5
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-10 70.1 103 42.7
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.4e-10 70.1 110 40.9
Gorai.007G106700 Gossypium raimondii HOM05D066925 ORTHO05D047563 1.8e-10 69.7 120 42.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.3e-10 69.3 122 36.1
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.3e-10 69.3 114 37.7
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.0e-10 68.9 103 40.8
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 6.8e-10 67.8 88 40.9
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 6.8e-10 67.8 97 38.1
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.8e-10 67.8 122 36.1
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 8.8e-10 67.4 54 55.6
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.2e-09 67.0 103 38.8
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.5e-09 66.6 109 36.7
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.5e-09 66.6 39 69.2
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 2.0e-09 66.2 49 61.2
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.6e-09 65.9 88 42.0
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.4e-09 65.5 50 60.0
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 3.4e-09 65.5 100 40.0
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 7.5e-09 64.3 111 40.5
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 7.5e-09 64.3 49 53.1
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 9.8e-09 63.9 56 57.1
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 9.8e-09 63.9 105 34.3
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 9.8e-09 63.9 88 42.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 1.3e-08 63.5 107 37.4
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.3e-08 63.5 104 35.6
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.3e-08 63.5 93 40.9
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 1.7e-08 63.2 105 41.0
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.2e-08 62.8 36 66.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.2e-08 62.8 36 66.7
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 2.8e-08 62.4 103 35.9
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.8e-08 62.4 106 43.4
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 3.7e-08 62.0 104 36.5
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.7e-08 62.0 84 41.7
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.9e-08 61.6 43 60.5
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 6.3e-08 61.2 48 58.3
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 8.3e-08 60.8 41 63.4
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 1.4e-07 60.1 37 78.4
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-07 60.1 92 37.0
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.4e-07 60.1 42 64.3
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.4e-07 60.1 39 61.5
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.4e-07 59.3 92 37.0
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 2.4e-07 59.3 42 59.5
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 2.4e-07 59.3 29 82.8
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 2.4e-07 59.3 47 59.6
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 3.1e-07 58.9 31 74.2
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 4.1e-07 58.5 56 48.2
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 4.1e-07 58.5 31 71.0
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 5.4e-07 58.2 48 56.2
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 5.4e-07 58.2 38 57.9
HPP92_005512 Vanilla planifolia HOM05D007041 ORTHO05D008036 7.0e-07 57.8 48 47.9
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 9.2e-07 57.4 122 33.6
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.2e-06 57.0 87 40.2
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.6e-06 56.6 30 73.3
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.6e-06 56.6 30 73.3
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.0e-06 56.2 43 58.1
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 2.7e-06 55.8 47 51.1
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.5e-06 55.5 90 36.7
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 58 48.3
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.5e-06 55.1 110 32.7
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 53 49.1


User provided reference genes

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