Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 8.5e-87 323.6 154 100.0
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.8e-74 282.0 165 86.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.8e-74 282.0 165 86.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.8e-74 282.0 165 86.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 2.9e-71 271.9 165 82.4
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 9.8e-67 256.9 164 78.0
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 2.3e-63 245.7 164 74.4
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 6.6e-63 244.2 164 75.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 8.6e-63 243.8 166 74.1
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.2e-62 241.5 165 73.9
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 4.2e-62 241.5 166 74.1
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.5e-62 241.1 167 74.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.2e-61 240.0 176 70.5
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.1e-61 239.2 164 73.8
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.8e-61 238.8 164 74.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.8e-61 238.8 164 74.4
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 8.0e-61 237.3 164 71.3
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.0e-61 237.3 167 72.5
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-60 236.9 167 73.1
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.4e-60 236.5 177 70.1
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 4.0e-60 235.0 167 73.1
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 4.0e-60 235.0 167 71.9
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.8e-60 234.2 167 73.1
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 6.8e-60 234.2 167 71.3
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 6.8e-60 234.2 167 73.1
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 6.8e-60 234.2 164 71.3
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 6.8e-60 234.2 150 78.0
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 8.9e-60 233.8 150 78.7
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.0e-59 232.6 164 72.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.0e-59 232.6 169 72.2
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.0e-59 232.6 165 70.9
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.6e-59 232.3 167 71.3
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.6e-59 232.3 164 71.3
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 4.4e-59 231.5 164 69.5
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.7e-59 231.1 164 71.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 7.5e-59 230.7 145 77.9
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 7.5e-59 230.7 164 71.3
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.7e-58 229.6 151 74.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.2e-58 229.2 164 69.5
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 3.7e-58 228.4 151 75.5
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 6.3e-58 227.6 164 68.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 8.3e-58 227.3 165 68.5
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.1e-57 226.9 169 69.2
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-57 226.9 164 69.5
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 4.1e-57 224.9 169 69.2
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 4.1e-57 224.9 164 68.9
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 4.1e-57 224.9 151 74.2
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 5.4e-57 224.6 166 68.1
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 7.0e-57 224.2 199 60.8
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 9.2e-57 223.8 166 69.9
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.6e-56 223.0 151 74.8
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.6e-56 223.0 165 67.9
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.7e-56 222.2 151 72.2
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.8e-56 220.7 149 73.2
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.0e-55 220.3 155 67.7
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.3e-55 219.2 149 72.5
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.9e-55 218.8 149 72.5
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 3.9e-55 218.4 155 72.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.9e-55 218.4 166 68.1
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 8.6e-55 217.2 178 65.7
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 8.6e-55 217.2 217 55.8
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.5e-54 216.5 149 72.5
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.5e-54 216.5 151 69.5
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.5e-54 215.7 164 68.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.5e-54 215.7 164 67.7
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.3e-54 215.3 149 70.5
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 4.3e-54 214.9 149 72.5
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 9.5e-54 213.8 165 66.1
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 9.5e-54 213.8 167 66.5
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.2e-53 213.4 149 71.1
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.6e-53 213.0 149 71.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.6e-53 213.0 156 69.9
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.8e-53 212.2 164 65.9
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.8e-53 212.2 165 66.1
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 3.6e-53 211.8 164 65.2
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.6e-53 211.8 166 65.7
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 8.0e-53 210.7 134 79.1
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 1.0e-52 210.3 149 70.5
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 1.0e-52 210.3 149 70.5
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.0e-52 210.3 147 70.7
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.0e-52 210.3 149 69.8
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.8e-52 209.5 149 69.8
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 2.3e-52 209.1 222 52.7
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 4.0e-52 208.4 152 68.4
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 5.2e-52 208.0 149 69.8
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 5.2e-52 208.0 133 78.9
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 5.2e-52 208.0 166 65.1
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 6.8e-52 207.6 166 65.1
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 6.8e-52 207.6 159 67.3
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 8.9e-52 207.2 201 57.2
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.5e-51 206.5 149 68.5
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.5e-51 206.5 149 68.5
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.0e-51 206.1 165 64.8
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 2.6e-51 205.7 150 68.7
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 3.4e-51 205.3 148 68.9
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 4.4e-51 204.9 147 71.4
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.8e-51 203.8 150 68.0
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.3e-50 203.4 150 68.0
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 4.9e-50 201.4 150 67.3
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 4.9e-50 201.4 153 65.4
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.3e-50 200.7 167 64.7
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.1e-49 200.3 134 74.6
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 5.4e-49 198.0 133 73.7
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 1.2e-48 196.8 161 61.5
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-47 193.4 146 70.5
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.8e-45 185.7 133 71.4
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 4.0e-44 181.8 132 68.9
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 7.5e-43 177.6 160 62.5
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.4e-41 172.6 150 56.7
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 7.3e-38 161.0 195 49.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 1.6e-37 159.8 100 78.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 2.1e-37 159.5 100 79.0
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-37 159.1 163 55.8
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.1e-37 157.5 107 73.8
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-35 151.8 100 76.0
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 6.4e-34 147.9 100 70.0
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.2e-32 143.7 170 45.9
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.6e-32 141.7 130 63.1
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 6.6e-31 137.9 100 73.0
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.5e-27 126.7 150 44.7
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 7.1e-25 117.9 154 46.8
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.6e-21 106.7 187 36.9
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 6.9e-20 101.3 88 61.4
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-19 99.8 56 80.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 3.2e-17 92.4 56 75.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-14 83.2 68 61.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-13 80.1 41 92.7
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 3.8e-10 68.9 77 53.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 8.4e-10 67.8 122 35.2
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-09 66.6 40 75.0
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-07 58.9 65 46.2
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 5.1e-07 58.5 41 56.1


User provided reference genes

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