Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 0.0e+00 1518.4 844 100.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 0.0e+00 1493.8 844 98.9
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 0.0e+00 1439.9 845 95.9
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 0.0e+00 1203.3 858 81.2
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 0.0e+00 1170.6 858 75.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 0.0e+00 1129.8 855 75.8
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 0.0e+00 1104.7 853 75.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.7e-304 1048.5 855 73.0
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.6e-304 1048.1 855 72.9
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.2e-298 1028.9 855 72.2
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.6e-282 974.2 852 68.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.9e-274 948.3 852 68.4
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 5.0e-274 948.0 859 65.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.7e-258 896.3 872 61.2
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 2.8e-256 889.0 896 59.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-254 883.6 915 56.9
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 8.4e-253 877.5 896 59.5
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 2.4e-252 875.9 881 58.9
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.5e-249 865.9 897 58.1
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.3e-249 864.4 845 61.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-247 860.5 887 59.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-247 859.8 866 58.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 5.3e-247 858.2 865 60.6
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.1e-244 850.5 864 59.7
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.2e-243 847.0 820 61.6
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.3e-240 837.0 867 58.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.2e-238 830.5 879 57.3
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-235 820.1 887 56.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.0e-235 818.1 880 57.5
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.1e-234 815.1 892 56.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 6.2e-232 808.1 815 59.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.3e-231 805.1 886 55.6
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 6.9e-231 804.7 866 57.2
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.9e-228 796.6 886 56.7
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-228 796.2 868 57.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.1e-227 793.1 842 56.3
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.1e-227 793.1 941 52.6
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.3e-224 783.9 871 55.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 8.2e-224 781.2 934 53.2
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.4e-222 775.8 879 53.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 5.9e-222 775.0 766 60.2
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 7.6e-222 774.6 850 56.8
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.0e-221 774.2 834 55.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.2e-219 767.3 872 55.8
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.5e-219 765.8 885 54.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 6.1e-219 765.0 846 55.9
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.3e-218 763.1 885 52.3
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.3e-218 763.1 896 52.6
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.1e-217 760.8 872 54.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.7e-217 758.4 874 55.1
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.6e-216 756.9 883 54.6
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.8e-216 755.4 887 54.5
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-215 753.8 874 54.9
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 5.3e-215 751.9 885 53.7
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 9.0e-215 751.1 882 51.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 7.7e-214 748.0 872 54.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.2e-213 746.5 868 54.7
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.9e-213 746.1 878 53.4
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-212 744.2 880 51.7
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.9e-212 743.4 878 55.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.5e-212 743.0 767 57.9
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.1e-211 738.4 882 51.6
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.8e-210 736.9 910 52.2
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.7e-210 734.9 885 52.8
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.5e-209 733.0 880 53.0
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.3e-208 730.7 883 51.1
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.9e-205 719.5 866 53.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 4.4e-201 705.7 878 50.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 7.4e-201 704.9 796 56.0
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 9.7e-201 704.5 870 52.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.5e-198 696.0 864 51.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 3.2e-196 689.5 858 51.4
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.2e-194 682.2 904 50.2
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.7e-194 681.8 764 55.6
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 9.7e-193 677.9 824 54.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.4e-191 673.3 867 53.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 9.1e-191 671.4 888 50.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.5e-190 669.1 866 51.4
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.5e-188 663.3 870 49.7
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.1e-187 660.2 916 49.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.4e-186 657.5 851 50.2
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 7.5e-185 651.7 860 49.5
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 8.5e-181 638.3 876 49.5
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.6e-179 632.9 659 56.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 4.0e-178 629.4 884 47.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 5.7e-177 625.5 880 51.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 7.5e-177 625.2 881 47.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 9.8e-177 624.8 864 49.0
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.7e-176 622.9 896 46.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.8e-173 612.8 868 46.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.7e-171 605.9 866 48.4
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.2e-169 601.3 798 49.4
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-168 597.0 883 47.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 7.8e-166 588.6 891 46.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.7e-165 587.4 869 44.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 5.0e-165 585.9 886 46.6
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 8.3e-160 568.5 862 45.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.6e-157 558.9 867 46.5
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.1e-155 553.9 749 47.8
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.2e-153 548.1 825 44.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 4.4e-153 546.2 854 44.1
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.1e-151 539.7 851 43.5
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 7.1e-151 538.9 796 46.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-150 537.0 841 46.3
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.4e-146 524.6 740 50.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 8.9e-146 521.9 891 43.1
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 3.4e-145 520.0 753 47.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.2e-144 517.3 747 47.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.9e-144 516.9 780 46.2
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-142 511.1 749 48.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.3e-141 507.3 622 49.8
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.1e-140 505.0 722 46.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 7.3e-140 502.3 711 48.4
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.6e-139 501.1 742 47.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.8e-139 500.4 741 47.4
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-138 498.4 864 42.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.3e-136 491.5 780 43.5
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 4.6e-134 483.0 780 42.4
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 6.0e-134 482.6 755 45.6
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 6.0e-134 482.6 827 44.7
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.8e-131 473.8 850 41.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.8e-130 471.1 876 40.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.6e-123 448.0 851 40.8
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 9.3e-119 432.2 848 39.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.2e-118 431.8 737 44.8
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-117 427.9 758 43.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.1e-116 425.2 760 42.2
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-116 424.5 736 44.3
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-114 418.7 734 43.7
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.6e-113 414.1 808 37.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.9e-112 410.6 737 43.7
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-111 407.9 736 43.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-100 372.1 733 41.7
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.3e-99 368.6 503 49.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-95 355.5 316 60.8
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-95 355.5 316 60.8
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.2e-86 325.5 421 48.9
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 6.5e-72 276.6 659 36.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.2e-71 274.2 396 47.0
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 6.1e-70 270.0 1019 31.1
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.7e-67 261.9 299 55.2
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-63 248.8 733 33.6
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 7.2e-63 246.5 895 30.3
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 4.9e-59 233.8 785 34.9
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.8e-58 231.9 417 40.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-52 212.6 853 27.4
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.0e-50 203.4 698 28.5
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 6.4e-43 180.3 355 36.9
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.0e-41 175.3 157 66.2
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.9e-40 171.0 150 64.7
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 8.6e-40 169.9 150 64.7
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-39 168.7 164 56.7
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.1e-34 152.9 131 68.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.9e-32 144.4 254 39.8
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-25 122.9 97 71.1
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-25 122.9 175 44.6
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 6.0e-25 120.6 121 57.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 5.1e-24 117.5 171 42.7
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.6e-22 112.5 113 61.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.6e-20 105.1 83 66.3
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-17 96.3 183 38.3
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 8.7e-16 90.1 165 40.0
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.1e-15 89.7 197 37.6
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 4.3e-15 87.8 87 58.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 4.3e-15 87.8 91 57.1
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.4e-13 82.0 123 41.5
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.5e-12 79.3 121 41.3
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 2.9e-11 75.1 258 30.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 6.4e-11 73.9 388 28.4
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-10 72.4 388 28.4
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.9e-10 72.4 214 31.3
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 4.6e-09 67.8 34 97.1
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 1.3e-08 66.2 119 42.0
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.0e-08 65.1 45 68.9
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 5.1e-08 64.3 69 59.4
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.3e-06 59.7 195 32.8


User provided reference genes

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