Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 5.5e-90 334.3 177 100.0
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 2.1e-89 332.4 177 99.4
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 3.8e-83 311.6 172 95.3
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 7.3e-74 280.8 176 84.7
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 1.7e-70 269.6 176 80.1
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 2.4e-69 265.8 176 80.1
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 5.6e-58 228.0 172 71.5
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 7.6e-55 217.6 172 66.9
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 9.9e-55 217.2 172 69.8
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 4.9e-54 214.9 172 68.0
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 6.4e-54 214.5 172 67.4
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 1.9e-53 213.0 176 64.2
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 2.4e-53 212.6 172 66.3
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 3.5e-52 208.8 172 65.1
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.6e-52 208.4 171 66.7
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 2.3e-51 206.1 172 64.0
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 3.3e-50 202.2 172 65.1
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 1.4e-48 196.8 174 60.3
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 5.2e-48 194.9 173 61.3
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 8.9e-48 194.1 172 62.2
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 2.0e-47 193.0 172 59.9
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.3e-46 190.3 172 59.3
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.3e-46 190.3 172 60.5
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 1.3e-46 190.3 172 57.6
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 1.7e-46 189.9 172 61.0
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 8.4e-46 187.6 167 58.1
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 1.1e-45 187.2 171 59.6
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 1.1e-45 187.2 173 59.5
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 2.4e-45 186.0 171 58.5
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 1.6e-44 183.3 167 57.5
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 4.6e-44 181.8 172 58.7
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.0e-43 180.6 173 59.0
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 1.3e-43 180.3 172 57.0
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 2.3e-43 179.5 167 56.3
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 2.3e-43 179.5 172 55.8
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 2.3e-43 179.5 172 57.0
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 3.9e-43 178.7 172 57.0
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 5.6e-42 174.9 176 55.1
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 7.3e-42 174.5 172 57.0
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.3e-41 173.7 189 52.4
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 4.8e-41 171.8 167 54.5
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 6.2e-41 171.4 170 56.5
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 4.0e-40 168.7 176 50.0
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 9.9e-39 164.1 174 54.0
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.9e-38 162.5 172 51.2
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 8.4e-38 161.0 172 53.5
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 1.6e-36 156.8 156 53.8
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 4.6e-36 155.2 176 51.1
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 7.9e-36 154.5 172 50.6
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 3.0e-35 152.5 167 50.9
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 5.1e-35 151.8 176 51.7
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 1.9e-34 149.8 172 52.3
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.3e-34 149.1 167 49.7
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.3e-34 149.1 167 50.3
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 5.6e-34 148.3 172 52.3
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 7.3e-34 147.9 171 50.9
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 6.2e-33 144.8 172 50.6
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 8.1e-33 144.4 167 47.9
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 8.1e-33 144.4 268 37.7
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 2.4e-32 142.9 172 50.6
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 1.5e-31 140.2 167 47.3
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 1.5e-31 140.2 167 47.3
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 4.5e-31 138.7 167 46.7
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 4.5e-31 138.7 167 46.7
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 4.5e-31 138.7 167 46.7
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 9.9e-31 137.5 188 45.7
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 1.7e-30 136.7 106 71.7
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 2.9e-30 136.0 171 50.9
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 9.3e-29 131.0 199 43.7
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 1.1e-26 124.0 207 41.5
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 1.5e-26 123.6 171 43.3
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 3.3e-26 122.5 172 43.6
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 9.6e-26 120.9 110 61.8
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 6.2e-25 118.2 106 60.4
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 9.0e-24 114.4 167 41.9
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 4.5e-23 112.1 102 58.8
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 2.9e-22 109.4 98 58.2
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 3.5e-20 102.4 171 40.9
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.9e-18 96.7 72 69.4
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.9e-18 96.7 72 69.4
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 7.4e-18 94.7 101 52.5
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.8e-16 90.1 66 66.7
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 1.8e-16 90.1 66 66.7
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 6.9e-16 88.2 101 49.5
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 2.2e-14 83.2 70 62.9
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 4.2e-13 79.0 58 69.0
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 1.2e-12 77.4 138 37.7
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 3.4e-07 59.3 69 47.8
AL2G14840 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 8.5e-06 54.7 61 44.3


User provided reference genes

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