Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.3e-299 1032.3 546 100.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.8e-296 1021.9 546 99.3
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.5e-292 1007.3 546 97.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.8e-256 889.0 552 85.9
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 8.6e-251 870.2 554 84.7
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.9e-242 842.4 551 82.2
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.8e-211 739.6 561 71.8
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.0e-211 738.8 543 72.2
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 5.7e-210 734.6 558 71.7
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.4e-205 719.9 560 69.8
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.1e-202 710.3 563 67.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 7.4e-202 707.6 550 69.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.2e-201 706.1 561 67.2
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.8e-201 704.9 544 69.5
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.5e-199 699.9 564 67.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 4.5e-199 698.4 564 68.6
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 2.2e-198 696.0 559 67.3
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.9e-198 695.7 552 66.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 6.5e-198 694.5 561 67.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 7.2e-197 691.0 554 65.9
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 6.1e-196 688.0 556 68.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 3.9e-195 685.3 551 71.0
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.9e-195 685.3 553 67.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 5.2e-195 684.9 561 65.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 8.8e-195 684.1 570 65.4
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.5e-194 683.3 557 67.0
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.4e-194 681.0 553 67.6
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 8.2e-193 677.6 568 65.7
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.2e-193 677.6 557 66.8
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-192 675.6 573 65.3
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 9.1e-192 674.1 563 64.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 7.7e-191 671.0 568 65.0
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.3e-190 670.2 547 65.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 2.9e-190 669.1 554 63.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.8e-190 668.7 574 65.2
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-190 668.3 573 64.7
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.2e-189 665.6 552 63.8
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.1e-188 662.9 570 63.3
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.0e-187 660.6 557 64.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.0e-187 660.6 570 63.7
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.8e-187 659.8 542 65.7
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 6.7e-187 657.9 558 64.5
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.2e-186 657.1 564 62.4
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.0e-186 656.4 551 62.3
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.6e-186 656.0 555 63.8
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 3.3e-186 655.6 555 62.5
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 4.4e-186 655.2 560 63.0
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 5.7e-186 654.8 557 63.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.3e-185 653.7 560 63.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.7e-185 653.3 553 64.7
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 3.7e-185 652.1 557 61.6
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 6.3e-185 651.4 555 63.1
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 8.2e-185 651.0 558 63.4
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.2e-183 647.1 556 64.2
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.0e-183 646.4 554 64.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-181 640.2 561 62.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.9e-181 639.8 555 62.9
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 4.2e-181 638.6 551 62.6
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 5.5e-181 638.3 658 55.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 9.4e-181 637.5 554 63.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 3.6e-180 635.6 556 61.0
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 8.0e-180 634.4 545 61.8
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 8.8e-179 630.9 558 64.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 3.4e-178 629.0 563 61.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.4e-178 628.6 560 60.4
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.4e-178 628.6 560 61.8
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-177 626.3 563 61.3
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.8e-177 625.9 548 63.1
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.7e-177 625.5 550 61.5
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.4e-176 622.9 558 60.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 3.5e-175 619.0 552 63.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 2.9e-174 615.9 551 61.9
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.1e-173 614.0 548 60.4
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 4.2e-173 612.1 541 61.0
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 2.8e-172 609.4 563 58.8
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.0e-171 605.9 552 60.1
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.0e-171 605.9 545 59.4
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.0e-171 605.9 583 58.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 8.8e-171 604.4 584 58.6
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.5e-170 601.3 549 59.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.7e-169 600.1 541 60.1
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.9e-169 598.6 576 57.8
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.3e-169 598.2 569 57.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 3.5e-167 592.4 574 58.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.9e-167 591.7 539 58.4
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.0e-166 590.9 549 59.4
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 3.8e-166 589.0 550 58.4
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 6.6e-166 588.2 568 57.9
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.6e-166 588.2 565 58.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.3e-165 585.9 569 56.9
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.4e-162 575.9 567 57.3
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 7.5e-162 574.7 577 57.2
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.3e-161 573.9 566 57.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.7e-161 573.5 566 57.8
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 8.3e-161 571.2 570 56.3
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.8e-160 570.1 563 57.5
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.8e-160 570.1 554 57.6
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.8e-160 570.1 554 57.9
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 9.2e-160 567.8 555 56.2
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.5e-149 533.9 448 63.4
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 5.6e-149 531.9 577 54.2
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.0e-146 523.5 530 53.6
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.3e-142 510.0 416 67.8
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.2e-140 504.2 281 92.5
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 6.2e-140 501.9 550 54.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.4e-139 500.7 414 66.7
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.2e-136 489.6 507 56.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 7.8e-135 485.0 432 61.8
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-134 482.6 511 54.8
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 3.2e-128 463.0 554 48.4
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 6.2e-124 448.7 559 47.4
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.6e-122 441.8 301 75.7
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.3e-117 426.4 550 45.3
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 9.9e-114 414.8 343 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.8e-110 404.1 554 45.8
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.1e-109 401.4 549 42.8
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.7e-103 380.2 550 40.9
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 1.5e-101 374.4 390 55.6
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.1e-95 352.4 466 48.1
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.1e-87 327.4 542 42.1
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.0e-86 325.1 309 58.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-81 308.1 579 39.9
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.9e-78 296.6 329 52.6
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-69 266.2 190 71.1
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.0e-67 259.2 490 40.6
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-66 258.5 174 75.3
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.5e-64 250.8 252 57.9
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.7e-60 236.9 161 72.0
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 8.3e-60 235.7 413 36.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 7.3e-48 196.1 138 70.3
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.8e-46 191.4 141 71.6
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-44 185.3 139 69.8
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-41 174.5 316 40.5
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-41 173.3 118 73.7
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 5.6e-40 169.9 118 72.0
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 7.5e-37 159.5 139 56.8
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 4.1e-27 127.1 175 44.6
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-26 124.8 287 35.5
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-23 113.6 86 66.3
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-22 112.5 90 66.7
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-20 104.8 176 39.2
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 9.2e-19 99.4 103 49.5
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.9e-16 91.7 56 69.6
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 8.1e-15 86.3 67 65.7
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-11 75.1 168 37.5
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 7.1e-11 73.2 166 39.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-10 72.0 43 72.1
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 7.8e-10 69.7 50 68.0
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 3.9e-09 67.4 48 70.8
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 6.6e-09 66.6 56 58.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.5e-08 64.7 73 49.3
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 2.5e-08 64.7 177 37.9
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-07 62.0 36 77.8
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 3.6e-07 60.8 43 65.1
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 8.1e-07 59.7 158 33.5
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 1.1e-06 59.3 42 61.9
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 165 35.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-06 58.5 52 59.6


User provided reference genes

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