Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.2e-229 797.3 399 100.0
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-225 786.2 399 98.5
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-224 782.3 399 98.5
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.3e-199 698.0 395 88.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 4.4e-196 688.0 398 86.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.1e-189 666.8 392 85.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.9e-179 632.1 398 79.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 4.9e-179 631.3 388 79.6
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 3.2e-170 602.1 389 75.1
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 5.5e-170 601.3 392 76.0
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.2e-169 600.1 395 74.9
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 3.9e-168 595.1 396 75.3
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 5.1e-168 594.7 388 76.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.5e-167 592.4 393 74.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 6.3e-166 587.8 391 72.6
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-165 585.9 392 73.0
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.3e-165 584.7 397 71.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 5.9e-164 581.3 399 73.2
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 7.7e-164 580.9 393 73.3
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 1.3e-163 580.1 388 72.9
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 6.5e-163 577.8 391 72.1
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.4e-162 576.6 394 73.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.9e-162 576.2 391 73.4
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.9e-162 576.2 399 72.4
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.5e-162 575.9 388 74.0
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.2e-162 575.5 391 72.4
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 7.2e-162 574.3 394 72.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 9.4e-162 573.9 396 71.5
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.6e-161 573.2 389 72.0
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.1e-161 572.8 403 71.7
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.1e-161 572.8 397 71.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.6e-161 572.0 391 72.9
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 4.6e-161 571.6 425 68.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.6e-161 571.6 393 71.8
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.1e-161 571.2 395 71.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 7.9e-161 570.9 392 72.2
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 3.9e-160 568.5 399 71.4
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.9e-160 568.5 388 72.2
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 5.1e-160 568.2 392 69.9
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 3.3e-159 565.5 391 70.6
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.7e-159 564.7 394 72.1
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 7.4e-159 564.3 393 70.7
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 7.4e-159 564.3 388 72.4
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 9.7e-159 563.9 391 72.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.8e-158 562.4 401 70.3
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.8e-158 561.6 378 72.8
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 3.1e-157 558.9 391 70.1
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.1e-157 558.9 392 71.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.0e-155 553.9 414 67.1
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.4e-154 550.1 397 68.5
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.4e-154 550.1 413 66.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.4e-154 550.1 386 69.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.9e-154 549.7 393 67.9
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.9e-154 549.7 388 69.6
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.9e-154 549.7 450 63.6
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.7e-153 545.0 391 68.3
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.7e-153 545.0 388 67.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 6.1e-153 544.7 391 69.1
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.8e-152 543.1 390 67.7
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 3.9e-152 542.0 395 68.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.1e-151 540.4 392 67.1
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.6e-151 539.3 428 64.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 9.7e-151 537.3 391 68.5
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 2.2e-150 536.2 388 67.3
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.8e-149 533.1 469 60.3
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.4e-149 532.7 356 74.2
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 4.1e-149 531.9 390 67.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.3e-149 531.6 391 68.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.0e-149 531.2 428 63.3
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 7.0e-149 531.2 391 68.0
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 9.1e-149 530.8 411 63.5
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 2.9e-147 525.8 393 65.9
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 3.6e-145 518.8 396 65.2
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.0e-144 517.3 387 65.6
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 5.2e-144 515.0 394 65.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.1e-143 513.8 378 67.5
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 2.0e-143 513.1 356 71.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.3e-143 512.3 400 63.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.0e-136 490.7 331 73.1
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 4.5e-132 475.3 356 67.1
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.8e-131 472.2 383 65.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.5e-131 471.5 387 61.8
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 5.5e-130 468.4 503 51.9
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 2.2e-126 456.4 391 58.6
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 3.1e-125 452.6 442 55.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.3e-120 436.4 432 54.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.2e-117 426.0 349 60.7
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 5.4e-117 425.2 400 57.2
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.6e-113 412.5 313 64.5
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.1e-112 409.5 357 58.8
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 7.5e-111 404.8 398 55.8
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 9.8e-111 404.4 283 68.6
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.4e-109 400.6 297 68.0
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 1.5e-103 380.6 272 67.3
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 6.4e-102 375.2 401 47.9
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 9.5e-98 361.3 247 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 6.2e-97 358.6 401 48.4
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-93 346.7 232 73.3
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 6.6e-91 338.6 395 46.8
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.2e-87 327.8 302 55.3
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 9.3e-85 318.2 235 66.8
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 3.0e-83 313.2 220 70.5
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 6.4e-78 295.4 482 36.5
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.4e-72 276.9 371 42.3
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 8.4e-70 268.5 199 65.8
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.7e-65 253.1 324 41.7
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.2e-60 238.0 150 76.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-54 215.3 124 87.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-54 215.3 124 87.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-54 215.3 124 87.1
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-53 213.0 124 86.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-52 211.1 124 85.5
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-52 211.1 124 85.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-50 204.5 114 86.8
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-49 199.5 101 94.1
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.1e-48 196.8 101 94.1
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 6.5e-46 189.1 535 27.3
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 9.1e-40 168.7 130 63.8
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-39 167.2 81 98.8
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 5.5e-37 159.5 111 71.2
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-33 148.3 71 98.6
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-33 148.3 104 67.3
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.1e-32 142.1 70 97.1
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.1e-32 142.1 70 97.1
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-31 141.4 114 65.8
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-31 140.6 70 95.7
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-30 138.3 171 46.8
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-29 134.0 80 80.0
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.4e-29 132.1 70 92.9
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.6e-28 131.3 79 77.2
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.1e-28 131.0 70 90.0
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 4.8e-25 119.8 111 58.6
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 4.8e-25 119.8 251 36.7
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 6.3e-25 119.4 182 37.9
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.0e-22 112.1 292 28.1
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.5e-18 98.2 60 78.3
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-18 98.2 71 64.8
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-18 97.8 128 43.0
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 9.1e-16 89.0 69 59.4
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.7e-15 87.4 54 79.6
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.2e-14 84.3 63 71.4
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.0e-11 73.9 106 36.8
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 4.1e-08 63.5 46 63.0
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 1.6e-07 61.6 32 84.4
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-06 57.4 58 41.4
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.0e-06 56.6 34 76.5


User provided reference genes

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