Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.2e-270 936.0 502 100.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.2e-268 927.9 502 99.4
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.6e-267 924.1 502 98.8
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.1e-243 845.5 492 91.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 7.0e-239 830.5 503 88.9
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.1e-236 823.2 493 90.3
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.7e-232 808.1 502 85.7
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 8.3e-232 807.0 503 86.7
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-231 805.8 502 85.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.6e-217 758.8 470 86.8
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.3e-216 756.5 502 81.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.6e-212 741.1 502 80.5
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.9e-208 728.0 504 79.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 6.4e-208 727.6 506 78.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.1e-207 726.9 487 80.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 7.8e-206 720.7 505 79.8
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 2.3e-205 719.2 504 78.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 5.0e-205 718.0 503 77.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.5e-204 716.5 502 77.7
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.1e-203 712.6 489 80.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 8.1e-203 710.7 503 78.1
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.3e-202 709.1 504 78.4
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.1e-202 708.8 503 77.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 8.9e-202 707.2 504 77.4
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.7e-200 703.0 489 79.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 8.3e-200 700.7 503 76.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.1e-199 700.3 503 76.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.1e-199 700.3 491 78.4
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.7e-198 695.7 504 76.8
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.7e-197 693.0 491 79.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.6e-197 691.0 504 76.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 6.6e-197 691.0 503 76.9
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.6e-197 690.6 523 73.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.3e-196 688.7 487 76.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 3.3e-196 688.7 491 78.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.3e-196 688.7 476 79.2
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 6.2e-195 684.5 502 75.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 8.1e-195 684.1 491 78.0
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-194 683.3 533 71.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.4e-194 682.6 505 75.6
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.5e-193 679.9 505 74.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.6e-193 679.1 490 77.3
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.7e-192 676.4 504 75.2
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.9e-192 675.6 512 73.8
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.4e-191 672.5 524 73.1
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.4e-191 672.5 505 73.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.1e-191 671.8 493 74.2
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 5.4e-191 671.4 472 78.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 7.1e-191 671.0 503 74.4
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 9.2e-191 670.6 502 73.1
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.6e-190 669.8 503 74.4
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 6.0e-190 667.9 486 76.5
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 7.8e-190 667.5 509 73.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.3e-189 666.0 503 73.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 3.9e-189 665.2 498 74.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.9e-189 665.2 502 73.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 8.7e-189 664.1 493 75.9
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 6.2e-187 657.9 487 73.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.4e-186 656.0 497 74.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.0e-186 655.2 489 74.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 9.0e-186 654.1 487 74.1
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.6e-185 652.5 498 72.1
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.3e-184 650.2 489 73.0
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.4e-183 646.7 476 73.7
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.2e-183 645.6 476 74.2
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 5.4e-183 644.8 476 73.7
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-182 643.3 486 71.6
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.6e-182 643.3 488 74.6
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.7e-182 642.5 487 72.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.9e-181 638.6 497 72.4
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 5.1e-181 638.3 503 69.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 5.1e-181 638.3 478 74.9
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 6.6e-181 637.9 504 71.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 8.7e-181 637.5 504 71.6
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.3e-180 635.2 504 71.2
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.3e-179 633.6 498 71.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.8e-179 632.5 490 71.2
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.6e-177 624.4 501 69.9
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-176 623.6 486 70.4
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.8e-176 622.1 484 70.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 3.8e-176 622.1 500 69.8
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.1e-175 620.5 484 70.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.9e-175 619.8 441 76.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.4e-175 618.2 504 71.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 9.3e-175 617.5 511 68.1
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.5e-174 615.5 476 70.2
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.6e-174 615.1 505 70.1
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-173 613.6 503 67.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.1e-172 610.5 423 79.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.3e-172 608.6 504 69.8
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 8.1e-171 604.4 508 66.9
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.4e-170 602.8 509 66.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.3e-170 601.7 501 67.1
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 6.9e-170 601.3 504 66.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.9e-170 601.3 525 67.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.2e-169 600.5 496 68.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.9e-168 595.9 510 67.8
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 6.4e-168 594.7 511 67.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 8.4e-168 594.3 493 67.7
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.1e-167 594.0 506 66.4
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.6e-166 588.6 363 86.2
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.4e-161 572.4 506 65.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.4e-154 550.4 383 78.6
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.7e-152 543.5 441 69.8
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.0e-149 534.3 532 61.5
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.1e-146 521.2 494 62.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 5.5e-143 511.9 483 62.3
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 6.7e-141 505.0 483 59.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-135 487.6 485 60.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 6.1e-134 481.9 466 60.1
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.9e-128 463.0 484 59.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.0e-128 462.2 454 62.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.3e-125 453.4 405 64.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.4e-124 449.1 396 68.2
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.2e-121 441.0 464 55.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 7.2e-119 431.8 374 68.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 6.8e-117 425.2 495 56.6
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-107 394.0 373 63.5
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.7e-107 394.0 373 63.5
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 7.3e-95 352.1 209 85.6
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.8e-93 347.4 268 75.0
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.3e-88 331.3 409 48.2
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.6e-86 324.3 420 51.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.8e-85 320.9 350 53.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.3e-85 320.5 324 54.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-80 305.1 222 74.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.5e-79 300.4 220 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.6e-79 299.3 401 46.1
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.6e-62 243.4 205 68.8
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.3e-61 239.6 274 55.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.8e-59 233.4 365 42.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.4e-53 214.9 413 38.0
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.9e-49 199.1 403 34.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-47 195.3 164 65.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 7.6e-44 182.6 288 46.5
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.3e-40 171.8 132 75.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-35 154.8 99 79.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-34 151.4 109 66.1
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 4.6e-33 146.7 94 79.8
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.7e-30 137.1 90 77.8
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.2e-26 122.9 119 60.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.5e-23 115.2 185 42.7
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.5e-20 105.1 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.0e-16 90.9 93 54.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-13 81.6 71 67.6
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-12 77.4 66 66.7
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-12 76.3 62 62.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-12 76.3 62 62.9
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.2e-10 69.7 62 58.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 3.6e-09 67.4 59 66.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.4e-08 65.5 50 72.0
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.5e-07 62.0 192 32.8
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.3e-06 56.6 32 87.5


User provided reference genes

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