Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G050100 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.9e-107 392.1 228 100.0
Gohir.D08G050500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 3.5e-105 385.2 228 91.7
Gohir.A08G040400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 9.6e-95 350.5 228 84.6
Duzib138G0624 Durio zibethinus HOM05D008182 ORTHO05D001888 2.8e-54 216.1 235 51.5
Duzib211G0330 Durio zibethinus HOM05D008182 ORTHO05D001888 5.9e-52 208.4 234 51.3
Thecc.01G314800 Theobroma cacao HOM05D008182 ORTHO05D001888 2.9e-43 179.5 228 53.5
COL.COLO4_23220 Corchorus olitorius HOM05D008182 ORTHO05D001888 3.2e-42 176.0 225 44.0
Gorai.007G122100 Gossypium raimondii HOM05D008182 ORTHO05D001888 3.6e-41 172.6 228 43.9
Gohir.D11G113500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 6.1e-41 171.8 228 43.4
Gohir.D11G113400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.0e-40 171.0 230 43.0
Gohir.A11G108700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.3e-40 169.9 230 42.2
Gohir.A11G109000 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.2e-39 167.5 228 42.1
Gohir.D11G113300 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.2e-39 167.5 230 42.6
Gohir.A11G108900 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.6e-39 166.4 228 42.1
Gorai.007G121900 Gossypium raimondii HOM05D008182 ORTHO05D001888 4.4e-39 165.6 230 42.2
Gohir.A09G224700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 4.1e-37 159.1 169 48.5
Gorai.007G122000 Gossypium raimondii HOM05D008182 ORTHO05D001888 7.0e-37 158.3 230 41.3
Gohir.D09G226500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.6e-36 157.1 166 48.8
Gohir.A09G224750 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.0e-36 156.8 169 46.7
Gohir.D09G222600 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.0e-36 156.8 160 49.4
Gorai.006G243800 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.0e-36 156.8 160 49.4
Gohir.A09G220400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.7e-36 156.4 154 49.4
Gorai.006G243900 Gossypium raimondii HOM05D008182 ORTHO05D001888 1.3e-35 154.1 161 49.7
Gohir.D09G222650 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.3e-35 153.3 161 49.7
Gorai.006G248100 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.9e-35 152.9 166 48.2
Gohir.A09G224800 Gossypium hirsutum HOM05D008182 ORTHO05D001888 7.2e-34 148.3 167 46.1
Gohir.A11G108866 Gossypium hirsutum HOM05D008182 ORTHO05D001888 7.2e-34 148.3 230 38.7
Gorai.006G244000 Gossypium raimondii HOM05D008182 ORTHO05D001888 7.2e-34 148.3 169 43.8
Gohir.D09G222700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 9.5e-34 147.9 169 43.8
Gorai.006G248300 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.1e-33 146.7 167 45.5
Gorai.006G248200 Gossypium raimondii HOM05D008182 ORTHO05D001888 6.1e-33 145.2 169 44.4
Gohir.A09G220433 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.4e-32 144.1 149 50.3
Gohir.D09G226600 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.4e-32 144.1 167 44.9
Gohir.D09G226550 Gossypium hirsutum HOM05D008182 ORTHO05D001888 3.0e-32 142.9 169 43.2
Gohir.A09G220466 Gossypium hirsutum HOM05D008182 ORTHO05D001888 6.3e-30 135.2 151 42.4
Gohir.A11G308750 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.3e-30 134.8 164 42.7
Gohir.A03G130301 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.7e-28 129.8 164 40.9
Gohir.A08G119600 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.6e-27 124.8 226 34.1
Gohir.D08G140500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.1e-25 120.2 226 33.2
Gorai.004G144600 Gossypium raimondii HOM05D008182 ORTHO05D001888 2.1e-25 120.2 226 33.2
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 5.4e-21 105.5 166 36.7
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 1.2e-20 104.4 171 35.7
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 1.0e-19 101.3 171 34.5
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 1.7e-19 100.5 154 35.7
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 3.0e-19 99.8 171 35.1
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 6.6e-19 98.6 153 36.6
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 1.1e-18 97.8 151 33.1
Cpa.g.sc18.59 Carica papaya HOM05D008182 ORTHO05D001888 1.9e-18 97.1 157 33.1
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 7.3e-18 95.1 157 36.3
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 7.3e-18 95.1 157 36.3
Gohir.D12G127800 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.2e-17 94.4 153 36.6
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 6.2e-17 92.0 152 40.8
Gorai.008G138700 Gossypium raimondii HOM05D008182 ORTHO05D001888 8.1e-17 91.7 153 35.9
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 2.3e-16 90.1 165 33.3
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 4.0e-16 89.4 148 33.8
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 5.2e-16 89.0 155 35.5
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 6.8e-16 88.6 149 35.6
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 2.0e-15 87.0 140 37.9
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 2.0e-15 87.0 155 35.5
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.6e-15 86.7 153 36.6
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 2.6e-15 86.7 146 35.6
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 2.6e-15 86.7 162 33.3
Gohir.A12G124000 Gossypium hirsutum HOM05D008182 ORTHO05D001888 3.4e-15 86.3 153 34.6
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 3.4e-15 86.3 134 36.6
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 5.8e-15 85.5 152 34.9
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 5.8e-15 85.5 152 34.9
Potri.002G194800 Populus trichocarpa HOM05D008182 ORTHO05D001888 9.8e-15 84.7 162 34.0
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.3e-14 84.3 156 33.3
Actinidia21348 Actinidia chinensis HOM05D008182 ORTHO05D001888 3.7e-14 82.8 157 33.8
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 3.7e-14 82.8 162 33.3
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 6.4e-14 82.0 157 34.4
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 8.3e-14 81.6 121 35.5
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 8.3e-14 81.6 148 34.5
CARHR142730 Cardamine hirsuta HOM05D026554 ORTHO05D001888 3.2e-13 79.7 154 27.9
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 5.4e-13 79.0 152 32.2
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 7.1e-13 78.6 148 30.4
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 7.1e-13 78.6 148 30.4
Rhsim01G0293400 Rhododendron simsii HOM05D008182 ORTHO05D001888 1.6e-12 77.4 177 31.6
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 2.1e-12 77.0 153 28.8
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 2.7e-12 76.6 153 34.6
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 4.6e-12 75.9 146 31.5
Sabra14G0088500 Salix brachista HOM05D008182 ORTHO05D001888 4.6e-12 75.9 165 29.7
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 6.0e-12 75.5 143 32.9
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 6.0e-12 75.5 152 28.3
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 1.0e-11 74.7 148 31.1
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 1.7e-11 73.9 152 27.0
TWI36G1295 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 1.7e-11 73.9 127 32.3
Potri.014G119400 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.3e-11 73.6 165 29.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.3e-11 73.6 154 33.1
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 3.0e-11 73.2 165 29.7
AT2G47340 Arabidopsis thaliana HOM05D026554 ORTHO05D001888 3.9e-11 72.8 155 27.1
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.9e-11 72.8 150 34.0
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 3.9e-11 72.8 149 32.9
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 6.6e-11 72.0 143 30.8
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 6.6e-11 72.0 161 31.1
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 8.6e-11 71.6 158 32.9
Ca_01851_v3 Cicer arietinum L. HOM05D005742 ORTHO05D001888 2.5e-10 70.1 145 31.0
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 2.5e-10 70.1 152 32.9
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 2.5e-10 70.1 151 31.1
VMungo0540G2083 Vigna mungo HOM05D005742 ORTHO05D001888 2.5e-10 70.1 157 29.9
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 4.3e-10 69.3 124 29.0
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 4.3e-10 69.3 147 32.0
Phvul.007G213550 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 5.6e-10 68.9 133 33.1
Lj6g0026871 Lotus japonicus HOM05D008489 ORTHO05D010677 7.3e-10 68.6 117 31.6
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 7.3e-10 68.6 143 28.7
Glyma.03G220400 Glycine max HOM05D008489 ORTHO05D010677 9.5e-10 68.2 166 28.3
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 9.5e-10 68.2 145 34.5
VMungo0720G2810 Vigna mungo HOM05D008489 ORTHO05D010677 9.5e-10 68.2 133 33.1
Manes.04G123800 Manihot esculenta HOM05D008182 ORTHO05D001888 1.2e-09 67.8 148 28.4
Phvul.007G213600 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 3.6e-09 66.2 133 32.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 4.7e-09 65.9 147 30.6
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 4.7e-09 65.9 146 28.1
Psat1g160600 Pisum sativum HOM05D005742 ORTHO05D001888 4.7e-09 65.9 147 29.3
VMungo0540G0961 Vigna mungo HOM05D005742 ORTHO05D001888 8.1e-09 65.1 143 30.8
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 1.4e-08 64.3 147 25.9
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 1.8e-08 63.9 159 30.8
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 2.3e-08 63.5 159 30.8
Phvul.001G213900 Phaseolus vulgaris HOM05D008489 ORTHO05D010677 4.0e-08 62.8 140 27.9
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 5.2e-08 62.4 143 28.7
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 5.2e-08 62.4 146 33.6
Phvul.006G117500 Phaseolus vulgaris HOM05D005742 ORTHO05D001888 6.8e-08 62.0 166 28.9
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.2e-07 61.2 147 29.3
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 1.5e-07 60.8 151 28.5
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 1.5e-07 60.8 146 29.5
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 9.9e-07 58.2 119 30.3
VMungo1383G1128 Vigna mungo HOM05D008489 ORTHO05D010677 9.9e-07 58.2 158 25.3
Actinidia25870 Actinidia chinensis HOM05D000068 ORTHO05D013931 1.3e-06 57.8 157 27.4
Glyma.09G021800 Glycine max HOM05D008489 ORTHO05D010677 1.7e-06 57.4 152 25.7
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 2.2e-06 57.0 143 28.0
Psat0s2317g0200 Pisum sativum HOM05D008489 ORTHO05D010677 2.2e-06 57.0 146 26.7
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.9e-06 56.6 144 28.5
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 3.7e-06 56.2 144 27.8
Dinv33126 Davidia involucrata HOM05D001340 ORTHO05D002318 3.7e-06 56.2 117 29.1
Ca_00798_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 4.9e-06 55.8 139 28.8
Os11g0677400 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 4.9e-06 55.8 151 30.5
arahy.Tifrunner.gnm1.ann1.4I2GBK Arachis hypogaea HOM05D008489 ORTHO05D010677 6.4e-06 55.5 144 24.3
arahy.Tifrunner.gnm1.ann1.E1ZLD6 Arachis hypogaea HOM05D008489 ORTHO05D010677 6.4e-06 55.5 144 24.3
arahy.Tifrunner.gnm1.ann1.X5UH65 Arachis hypogaea HOM05D005742 ORTHO05D001888 6.4e-06 55.5 143 28.7
Lalb_Chr18g0046661 Lupinus albus HOM05D008489 ORTHO05D010677 8.4e-06 55.1 160 28.1


User provided reference genes

Program Settings