Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.8e-79 298.1 153 100.0
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.8e-79 298.1 153 100.0
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-76 290.0 153 95.4
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.7e-58 229.6 156 77.6
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 7.0e-57 224.2 152 77.6
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 6.1e-53 211.1 141 78.7
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.0e-44 181.8 158 67.1
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 4.0e-44 181.8 158 67.1
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-43 180.3 158 65.8
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-29 133.3 160 50.0
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-29 133.3 160 51.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.8e-29 132.5 160 50.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.0e-27 126.3 181 45.9
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.5e-27 124.4 157 47.1
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.7e-26 123.2 182 44.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-26 122.5 171 47.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 4.9e-26 121.7 181 45.9
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 8.3e-26 120.9 166 45.2
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 8.3e-26 120.9 180 46.1
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.9e-25 119.8 182 45.1
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 3.2e-25 119.0 187 44.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 4.1e-25 118.6 177 46.3
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 5.4e-25 118.2 188 44.7
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 5.4e-25 118.2 180 43.9
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.3e-23 113.6 168 45.2
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 8.6e-23 110.9 188 41.5
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-22 110.5 185 41.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.5e-22 110.2 162 49.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.9e-22 109.8 168 45.8
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.5e-22 109.4 167 44.3
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 3.3e-22 109.0 171 44.4
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 5.6e-22 108.2 170 40.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 5.6e-22 108.2 186 44.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.3e-22 107.8 191 40.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.3e-22 107.8 185 41.6
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 7.3e-22 107.8 174 40.2
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 9.5e-22 107.5 172 42.4
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 9.5e-22 107.5 151 48.3
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.2e-21 107.1 179 45.3
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.8e-21 105.9 188 40.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.8e-21 105.9 128 50.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 3.6e-21 105.5 172 40.1
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 6.2e-21 104.8 163 47.2
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 6.2e-21 104.8 173 45.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.1e-20 104.0 178 44.9
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.4e-20 103.6 174 45.4
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.4e-20 103.6 171 43.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.3e-20 102.8 169 43.2
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.3e-20 102.8 165 44.2
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.3e-20 102.8 193 40.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.2e-20 101.7 182 42.3
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 8.9e-20 100.9 170 41.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 8.9e-20 100.9 170 41.8
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-19 100.5 176 43.2
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-19 100.5 177 42.9
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.2e-19 100.5 166 42.8
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.6e-19 99.4 173 43.9
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.6e-19 99.4 180 41.1
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 4.4e-19 98.6 172 40.1
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 4.4e-19 98.6 170 41.8
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 5.8e-19 98.2 160 43.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.8e-19 98.2 171 44.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.3e-18 97.1 75 66.7
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.7e-18 96.7 159 41.5
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 1.7e-18 96.7 168 38.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 2.2e-18 96.3 174 46.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.2e-18 96.3 173 43.9
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 2.9e-18 95.9 173 43.4
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.9e-18 95.9 188 39.4
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 6.4e-18 94.7 150 42.0
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.4e-17 93.6 171 43.9
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-17 92.0 157 43.3
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.6e-16 90.1 174 41.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.6e-16 90.1 174 41.4
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.6e-16 88.6 178 39.3
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 7.8e-16 87.8 174 39.7
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 7.8e-16 87.8 146 45.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.0e-15 87.4 143 45.5
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.0e-15 87.4 143 45.5
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-15 87.4 179 37.4
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.0e-15 87.4 130 44.6
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.7e-15 86.7 174 42.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.0e-15 85.9 174 36.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.0e-15 85.9 183 41.5
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 8.6e-15 84.3 74 64.9
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.1e-14 84.0 169 35.5
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.5e-14 83.6 140 42.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.9e-14 83.2 163 36.8
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.9e-14 83.2 187 35.3
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.5e-14 82.8 169 38.5
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.5e-14 82.8 124 44.4
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.3e-14 82.4 184 35.3
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.3e-14 82.4 164 39.6
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.3e-14 82.0 150 40.7
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 4.3e-14 82.0 188 35.1
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 4.3e-14 82.0 181 35.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 7.3e-14 81.3 173 39.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 9.5e-14 80.9 84 56.0
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.2e-13 80.5 172 39.5
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 1.2e-13 80.5 172 39.0
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.2e-13 80.5 162 33.3
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.2e-13 80.5 199 34.7
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.1e-13 79.7 163 34.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.1e-13 79.7 189 35.4
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.1e-13 79.7 163 39.9
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.8e-13 79.3 176 36.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.8e-13 79.3 200 32.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.8e-13 79.3 168 38.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 3.6e-13 79.0 155 40.6
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 4.7e-13 78.6 165 37.6
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.1e-12 77.4 205 33.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.4e-12 77.0 165 37.0
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.4e-12 77.0 163 37.4
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.4e-12 77.0 76 53.9
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 2.3e-12 76.3 85 49.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.3e-12 76.3 130 41.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.3e-12 76.3 130 41.5
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.3e-12 76.3 94 48.9
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 3.1e-12 75.9 208 34.1
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.2e-12 75.1 76 53.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 6.8e-12 74.7 207 35.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 8.9e-12 74.3 165 39.4
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 8.9e-12 74.3 208 33.7
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.2e-11 73.9 178 33.1
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.2e-11 73.9 151 40.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.5e-11 73.6 90 48.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.5e-11 73.6 170 38.2
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.6e-11 72.8 165 37.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 4.4e-11 72.0 179 34.1
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 7.6e-11 71.2 168 35.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.3e-10 70.5 206 30.6
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-10 70.1 126 38.9
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.7e-10 70.1 75 50.7
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.9e-10 69.3 198 31.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 4.9e-10 68.6 54 68.5
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 4.9e-10 68.6 110 40.0
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 6.4e-10 68.2 180 33.9
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 1.4e-09 67.0 128 41.4
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.9e-09 66.6 82 53.7
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.1e-09 65.5 80 46.2
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 4.1e-09 65.5 157 35.7
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 4.1e-09 65.5 72 48.6
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.2e-08 63.9 80 47.5
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-08 63.5 69 49.3
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 6.0e-08 61.6 181 34.8
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.0e-07 60.8 74 44.6
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.7e-07 60.1 60 50.0
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 2.3e-07 59.7 128 40.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 6.6e-07 58.2 141 35.5
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 2.5e-06 56.2 57 57.9
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 7.3e-06 54.7 83 44.6


User provided reference genes

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