Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.8e-76 287.7 143 100.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.8e-76 287.7 143 100.0
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.1e-75 284.6 143 98.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.6e-63 246.1 143 81.8
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.4e-62 243.0 143 80.4
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.8e-62 242.7 143 80.4
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 5.7e-61 237.7 140 80.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 5.7e-61 237.7 140 80.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 5.7e-61 237.7 140 80.0
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.7e-61 237.7 140 79.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.7e-61 236.9 138 81.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.7e-60 236.1 140 80.0
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.7e-60 236.1 140 80.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.7e-60 236.1 140 78.6
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.7e-60 236.1 143 78.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.2e-60 235.7 141 79.4
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 6.3e-60 234.2 140 78.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.3e-60 234.2 140 79.3
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 8.2e-60 233.8 138 79.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.1e-59 233.4 141 80.9
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.4e-59 233.0 136 79.4
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.4e-59 233.0 138 78.3
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.4e-59 233.0 142 77.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.4e-59 232.3 145 76.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.4e-59 232.3 139 77.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 5.3e-59 231.1 137 79.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 7.0e-59 230.7 140 77.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.0e-59 230.7 140 77.9
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.0e-59 230.7 141 77.3
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-58 229.9 140 75.7
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.6e-58 229.6 140 78.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-58 229.2 140 78.6
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.6e-58 228.8 139 77.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 3.5e-58 228.4 140 76.4
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.5e-58 228.0 140 77.9
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 5.9e-58 227.6 138 76.8
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 7.7e-58 227.3 140 78.6
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 7.7e-58 227.3 156 71.8
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.7e-57 226.1 137 78.1
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 2.9e-57 225.3 137 76.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.5e-57 223.8 140 74.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.9e-56 222.6 140 72.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 7.2e-56 220.7 137 77.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 9.4e-56 220.3 169 64.5
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 9.4e-56 220.3 140 75.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.2e-55 219.9 137 75.9
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.2e-55 219.9 140 72.1
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-55 219.9 140 72.1
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.1e-55 219.2 143 73.4
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.7e-55 218.8 139 73.4
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 6.1e-55 217.6 159 69.2
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.1e-55 217.6 140 73.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 8.0e-55 217.2 140 72.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.0e-54 216.9 140 72.9
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.8e-54 216.1 143 71.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.8e-54 216.1 140 70.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 3.0e-54 215.3 140 74.3
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 4.0e-54 214.9 140 72.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 5.2e-54 214.5 142 72.5
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 5.2e-54 214.5 140 72.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 8.8e-54 213.8 140 70.0
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 140 71.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.5e-53 213.0 140 70.7
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.0e-53 212.6 143 69.2
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.6e-53 212.2 143 72.0
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 7.5e-53 210.7 140 71.4
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 9.7e-53 210.3 140 68.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.7e-52 209.5 131 74.8
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.8e-52 208.8 141 71.6
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.8e-52 208.8 141 70.9
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 3.7e-52 208.4 143 70.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 4.8e-52 208.0 139 71.9
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 6.3e-52 207.6 140 68.6
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 6.3e-52 207.6 141 70.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.1e-51 206.8 140 69.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-51 206.5 141 68.8
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.4e-51 205.7 140 70.7
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.1e-51 205.3 140 72.9
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 4.1e-51 204.9 142 67.6
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.1e-51 204.9 140 71.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.3e-51 204.5 128 72.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 5.3e-51 204.5 140 70.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.2e-50 203.4 140 67.9
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.6e-50 203.0 140 67.1
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 2.0e-50 202.6 138 68.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.0e-50 202.6 137 73.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 4.5e-50 201.4 115 80.0
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 5.9e-50 201.1 140 70.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-49 199.9 137 67.9
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-49 199.9 137 67.9
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.9e-49 198.7 135 69.6
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.9e-49 198.7 137 67.2
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.1e-48 196.8 141 68.1
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.1e-48 196.8 141 68.1
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.9e-48 196.1 204 53.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.5e-48 195.7 118 76.3
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 5.5e-48 194.5 138 65.9
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 5.5e-48 194.5 142 65.5
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 7.2e-48 194.1 140 67.1
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 7.2e-48 194.1 140 67.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 9.4e-48 193.7 142 64.1
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.2e-47 193.4 118 74.6
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.1e-47 192.6 140 66.4
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.1e-47 192.6 140 65.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-47 192.2 137 64.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 4.0e-46 188.3 142 65.5
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 6.8e-46 187.6 142 64.1
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 6.8e-46 187.6 139 64.7
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 8.8e-46 187.2 142 62.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-45 186.4 141 61.0
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.0e-45 186.0 137 63.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 2.6e-45 185.7 118 72.0
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 9.8e-45 183.7 140 63.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 4.8e-44 181.4 134 61.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.1e-43 180.3 141 60.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.4e-43 179.1 118 68.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 3.1e-43 178.7 115 71.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.1e-43 178.3 136 64.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-43 178.3 141 61.0
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 5.4e-43 177.9 117 71.8
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 9.1e-43 177.2 117 70.9
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-42 176.8 140 60.0
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-42 176.4 140 60.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-42 176.0 140 60.7
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 2.0e-42 176.0 137 60.6
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 5.9e-42 174.5 111 72.1
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.3e-41 172.6 141 58.2
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.5e-40 169.9 111 71.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 5.5e-40 167.9 114 67.5
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.8e-38 161.0 98 72.4
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-36 156.0 114 62.3
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.2e-36 156.0 137 54.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.3e-36 154.1 140 55.0
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-35 153.3 132 56.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-35 153.3 132 56.8
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 4.3e-32 141.7 142 50.7
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.0e-31 137.5 136 51.5
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 4.1e-27 125.2 83 68.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 2.7e-26 122.5 99 59.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 3.5e-26 122.1 99 58.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.7e-25 119.8 137 46.7
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 5.0e-25 118.2 142 47.2
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.3e-24 115.2 131 47.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.6e-24 114.8 93 59.1
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.2e-22 108.2 125 45.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.6e-21 105.9 143 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.7e-20 103.2 132 39.4
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-18 97.1 127 39.4
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-18 96.7 100 44.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.7e-18 95.9 130 36.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.8e-18 94.4 134 37.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.6e-15 85.5 65 60.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 4.7e-15 85.1 59 64.4
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.4e-14 83.6 55 69.1
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 2.3e-14 82.8 99 49.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.0e-13 79.7 82 46.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.6e-13 79.3 51 72.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 4.4e-13 78.6 133 35.3
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 51 70.6
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 51 70.6
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 51 70.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.7e-12 75.5 112 37.5
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 3.5e-10 68.9 49 63.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 6.0e-10 68.2 116 37.1
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.1e-06 57.4 32 81.2


User provided reference genes

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