Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.1e-174 614.8 340 100.0
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-169 599.4 340 98.2
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-166 589.0 340 96.8
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.5e-152 543.1 346 82.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 5.7e-152 541.2 346 87.0
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.7e-149 530.8 346 80.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 7.2e-147 524.2 344 75.9
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-145 518.5 346 77.5
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.8e-145 517.7 346 77.2
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.0e-144 516.2 347 79.0
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.6e-144 515.8 340 76.5
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.8e-144 513.8 340 75.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.8e-144 513.8 346 76.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 5.4e-142 508.1 346 74.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.4e-142 508.1 356 73.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 5.4e-142 508.1 340 73.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.6e-141 506.5 346 73.7
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.9e-141 504.6 344 75.0
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.9e-140 501.9 340 74.1
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.6e-140 500.7 347 78.1
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 2.8e-138 495.7 340 75.6
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.4e-137 493.4 340 72.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 5.2e-137 491.5 346 72.0
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-136 490.3 340 80.9
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.6e-136 489.2 344 75.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.4e-136 488.8 348 74.7
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.4e-136 488.8 343 70.8
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.5e-136 487.6 337 76.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.3e-135 486.9 346 73.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.2e-135 486.1 346 75.4
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.1e-134 481.9 347 71.8
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.1e-134 481.9 345 80.0
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.2e-133 480.3 348 72.1
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.0e-133 479.6 347 72.0
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.0e-133 479.6 341 79.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.7e-133 479.2 348 71.0
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.0e-133 478.0 344 73.3
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.3e-132 476.9 343 76.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.3e-132 476.1 347 68.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 3.0e-132 475.7 335 77.6
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.0e-132 475.7 346 71.1
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.9e-132 475.3 343 71.7
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.0e-132 474.9 348 77.6
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.6e-132 474.6 343 70.3
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 8.6e-132 474.2 350 72.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.9e-131 473.0 348 73.0
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 2.5e-131 472.6 348 77.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.5e-131 472.6 347 75.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 5.6e-131 471.5 347 68.3
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 9.5e-131 470.7 344 76.2
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 9.5e-131 470.7 342 71.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.5e-131 470.7 340 76.8
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.2e-130 470.3 349 71.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.2e-130 470.3 345 73.3
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.6e-130 469.9 351 74.9
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.1e-130 469.5 342 77.5
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-130 469.5 342 76.0
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.1e-130 469.5 344 68.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.1e-130 469.5 345 69.0
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.8e-130 469.2 343 76.7
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.8e-130 469.2 341 74.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 3.6e-130 468.8 346 73.7
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.6e-130 468.8 337 72.4
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.6e-130 468.8 345 75.9
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 4.7e-130 468.4 349 70.2
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-129 467.2 345 67.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.1e-129 467.2 347 70.9
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.1e-129 467.2 348 76.4
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.4e-129 466.8 344 76.5
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.8e-129 466.5 342 76.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.5e-128 463.4 348 76.4
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 9.8e-128 460.7 348 71.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 9.8e-128 460.7 349 72.5
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.7e-127 459.9 346 74.0
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-127 459.9 343 71.4
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.7e-127 459.9 349 72.5
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.7e-127 458.8 445 57.5
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.7e-127 458.8 344 68.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.7e-127 458.8 339 74.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.4e-127 458.0 340 72.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-126 457.2 338 69.2
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.1e-126 457.2 341 66.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-126 456.8 338 69.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.6e-125 451.8 339 68.4
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 6.0e-125 451.4 347 73.2
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.7e-124 449.9 362 65.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.7e-124 449.9 344 69.8
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 3.3e-123 445.7 342 68.4
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.6e-123 444.9 342 69.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.6e-123 444.9 346 68.5
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.8e-121 439.9 352 72.2
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.1e-121 439.1 342 65.5
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 4.0e-121 438.7 325 67.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.4e-120 435.6 346 66.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 9.9e-120 434.1 344 65.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 9.9e-120 434.1 341 72.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-119 433.7 336 64.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.4e-118 430.3 356 66.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 6.0e-117 424.9 349 65.6
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 7.8e-117 424.5 300 81.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-116 424.1 336 68.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.0e-116 424.1 344 65.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 5.1e-116 421.8 349 66.5
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 5.1e-116 421.8 301 70.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-115 420.6 346 65.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.3e-115 419.1 348 66.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 9.6e-115 417.5 334 62.0
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-114 417.2 340 62.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.2e-114 417.2 346 65.9
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 4.0e-113 412.1 342 60.8
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 6.8e-113 411.4 343 59.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 6.8e-113 411.4 346 61.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.8e-112 408.3 351 66.4
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.8e-112 408.3 340 59.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.9e-111 406.0 350 59.4
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.8e-111 405.6 346 64.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.2e-110 402.5 343 60.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.0e-108 397.5 351 63.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-108 396.7 292 72.6
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.7e-108 396.7 342 61.1
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.6e-108 394.8 348 61.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-107 393.7 334 58.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.5e-107 392.9 347 55.6
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 3.3e-107 392.5 343 56.0
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.3e-106 390.6 427 59.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.1e-106 389.8 235 82.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.6e-106 389.0 339 61.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 6.2e-106 388.3 341 65.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-105 387.1 348 56.0
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 5.8e-104 381.7 346 63.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.9e-100 369.0 335 61.8
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.5e-99 367.1 291 70.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.9e-99 366.7 289 66.8
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-94 350.1 359 59.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.7e-93 346.3 299 61.5
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 3.7e-90 335.9 300 68.3
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.2e-87 326.6 243 74.9
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 4.9e-87 325.5 287 59.2
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.2e-85 320.9 276 69.2
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 5.1e-84 315.5 244 75.8
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-83 314.3 219 74.9
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.4e-83 311.6 333 47.1
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.1e-81 307.8 243 70.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.9e-81 305.1 340 50.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 9.0e-81 304.7 278 57.6
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 9.0e-81 304.7 335 50.7
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-80 303.9 243 65.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.0e-79 301.2 187 80.2
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.0e-79 298.9 285 56.1
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 7.9e-77 291.6 334 43.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.1e-73 281.2 223 68.2
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.7e-71 273.9 342 41.2
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 6.5e-71 271.9 229 55.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.9e-70 270.4 334 48.5
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.2e-69 267.7 229 56.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.6e-69 266.2 238 58.4
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.3e-68 263.5 238 63.0
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 6.9e-65 251.9 145 80.7
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 1.3e-63 247.7 232 55.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.1e-61 240.4 245 53.5
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.7e-61 239.2 230 50.9
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.0e-57 225.3 130 80.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.7e-52 208.8 140 72.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.4e-44 184.5 105 81.9
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.1e-41 173.3 131 73.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.1e-41 172.9 128 73.4
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.7e-31 141.0 134 57.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 2.3e-31 140.6 83 84.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.0e-28 131.7 340 28.8
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.3e-28 130.6 76 80.3
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.4e-19 100.1 149 34.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.8e-19 99.4 57 78.9
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.7e-18 96.7 54 72.2
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 4.4e-11 73.2 140 35.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 7.1e-09 65.9 45 68.9
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 2.3e-07 60.8 103 37.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.9e-06 57.8 63 39.7


User provided reference genes

Program Settings