Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G043800 Gossypium raimondii HOM05D000275 ORTHO05D000181 5.4e-65 250.8 119 100.0
Gohir.D08G044800 Gossypium hirsutum HOM05D000275 ORTHO05D000181 3.1e-60 235.0 119 91.6
Gohir.A08G034300 Gossypium hirsutum HOM05D000275 ORTHO05D000181 8.4e-58 226.9 119 89.9
Gorai.004G043700 Gossypium raimondii HOM05D000275 ORTHO05D000181 1.3e-29 133.3 119 51.3
Gohir.D08G044700 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.6e-29 132.9 119 51.3
Gohir.A08G034200 Gossypium hirsutum HOM05D000275 ORTHO05D000181 5.8e-27 124.4 119 49.6
ClCG05G000860 Citrullus lanatus HOM05D000275 ORTHO05D000181 2.8e-21 105.5 93 49.5
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 2.8e-21 105.5 116 45.7
Duzib268G0438 Durio zibethinus HOM05D000275 ORTHO05D000181 4.8e-21 104.8 126 44.4
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 1.1e-20 103.6 118 40.7
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 1.8e-20 102.8 118 39.8
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.8e-20 102.8 118 39.8
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.8e-20 102.8 118 39.8
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 5.3e-20 101.3 116 43.1
CsaV3_3G008100 Cucumis sativus L. HOM05D000275 ORTHO05D000181 6.9e-20 100.9 89 46.1
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.2e-19 100.1 120 39.2
Atru.chr5.658 Acer truncatum HOM05D000275 ORTHO05D000181 2.0e-19 99.4 120 40.8
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 4.5e-19 98.2 119 41.2
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 7.7e-19 97.4 97 43.3
PGR042G1181 Punica granatum HOM05D000275 ORTHO05D000181 1.7e-18 96.3 101 44.6
Actinidia10131 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.9e-18 95.5 123 37.4
Sed0025062 Sechium edule HOM05D000275 ORTHO05D000181 2.9e-18 95.5 94 45.7
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 1.4e-17 93.2 119 40.3
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 1.9e-17 92.8 118 39.0
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.5e-17 92.4 103 44.7
Hma1.2p1_0295F.1_g116640 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 2.5e-17 92.4 120 41.7
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.2e-17 91.7 93 40.9
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.2e-17 91.7 93 40.9
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 9.4e-17 90.5 88 43.2
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 9.4e-17 90.5 119 39.5
Lalb_Chr21g0316631 Lupinus albus HOM05D000275 ORTHO05D000181 1.6e-16 89.7 114 37.7
Hma1.2p1_0295F.1_g116650 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 4.6e-16 88.2 94 41.5
Ciclev10022824m.g Citrus clementina HOM05D000275 ORTHO05D000181 7.9e-16 87.4 123 38.2
VMungo0540G1752 Vigna mungo HOM05D000275 ORTHO05D000181 1.0e-15 87.0 93 41.9
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.4e-15 86.7 123 36.6
HanXRQChr16g0524091 Helianthus annuus HOM05D009669 ORTHO05D000181 2.3e-15 85.9 93 43.0
Phvul.006G112211 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 3.0e-15 85.5 100 39.0
Glyma.03G257200 Glycine max HOM05D000275 ORTHO05D000181 3.9e-15 85.1 94 40.4
HanXRQChr17g0562751 Helianthus annuus HOM05D009669 ORTHO05D000181 6.7e-15 84.3 91 42.9
Peaxi162Scf00786g00431 Petunia axillaris HOM05D000275 ORTHO05D000181 1.1e-14 83.6 122 32.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.1e-14 83.6 98 41.8
Dinv32580 Davidia involucrata HOM05D009669 ORTHO05D000181 1.5e-14 83.2 90 42.2
Migut.B01858 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.5e-14 83.2 112 38.4
Gohir.D07G143100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.0e-14 82.8 124 36.3
Gohir.A07G138100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.5e-14 82.4 124 36.3
SalBow3G1637 Salvia bowleyana HOM05D009669 ORTHO05D000181 4.3e-14 81.6 117 34.2
GSVIVG01027088001 Vitis vinifera HOM05D009669 ORTHO05D000181 4.3e-14 81.6 101 37.6
Gorai.001G155200 Gossypium raimondii HOM05D000275 ORTHO05D000181 5.7e-14 81.3 124 35.5
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 9.7e-14 80.5 118 35.6
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 1.3e-13 80.1 110 34.5
ECA234G4055 Erigeron canadensis HOM05D009669 ORTHO05D000181 1.3e-13 80.1 92 41.3
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 1.7e-13 79.7 107 34.6
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.2e-13 79.3 120 39.2
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 2.2e-13 79.3 90 43.3
Lsat_1_v5_gn_4_33221 Lactuca sativa HOM05D009669 ORTHO05D000181 3.7e-13 78.6 93 40.9
Lsat_1_v5_gn_4_33160 Lactuca sativa HOM05D009669 ORTHO05D000181 2.4e-12 75.9 117 33.3
CAN.G986.13 Capsicum annuum HOM05D000275 ORTHO05D000181 3.1e-12 75.5 99 38.4
PSO210G3257 Papaver somniferum HOM05D000275 ORTHO05D000181 5.3e-12 74.7 114 33.3
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 6.9e-12 74.3 107 31.8
Hund19776 Selenicereus undatus HOM05D000275 ORTHO05D000181 6.9e-12 74.3 93 35.5
Nitab4.5_0004999g0110 Nicotiana tabacum HOM05D009669 ORTHO05D000181 9.1e-12 73.9 121 33.1
Nitab4.5_0000838g0170 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.5e-11 73.2 121 33.1
Gohir.A09G213654 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.0e-11 72.8 121 33.9
Oeu057986.1 Olea europaea HOM05D000275 ORTHO05D000181 2.0e-11 72.8 89 39.3
Nitab4.5_0000125g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 2.6e-11 72.4 109 32.1
HanXRQChr01g0000141 Helianthus annuus HOM05D000275 ORTHO05D000181 5.9e-11 71.2 111 31.5
HanXRQChr14g0439101 Helianthus annuus HOM05D000275 ORTHO05D000181 7.7e-11 70.9 89 37.1
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.0e-10 70.5 99 38.4
TWI53G1340 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 1.0e-10 70.5 114 34.2
Ciclev10022783m.g Citrus clementina HOM05D009669 ORTHO05D000181 1.3e-10 70.1 90 34.4
SGA_v2.0_scaffold373G50180 Striga asiatica HOM05D000275 ORTHO05D000181 1.3e-10 70.1 93 38.7
CAN.G348.15 Capsicum annuum HOM05D000275 ORTHO05D000181 1.7e-10 69.7 93 37.6
CiPaw.09G100800 Carya illinoinensis HOM05D000275 ORTHO05D003378 2.2e-10 69.3 100 37.0
Nitab4.5_0003128g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 2.2e-10 69.3 95 37.9
Sopen08g021450 Solanum pennellii HOM05D000275 ORTHO05D000181 2.2e-10 69.3 112 35.7
PGSC0003DMG400025538 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.2e-10 69.3 93 37.6
Medtr7g072830 Medicago truncatula HOM05D000275 ORTHO05D000181 2.9e-10 68.9 95 36.8
PSO017G0615 Papaver somniferum HOM05D000275 ORTHO05D000181 2.9e-10 68.9 96 35.4
PSO170G3699 Papaver somniferum HOM05D000275 ORTHO05D000181 2.9e-10 68.9 89 37.1
EL10Ac1g00279 Beta vulgaris HOM05D000275 ORTHO05D000181 3.8e-10 68.6 114 31.6
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 3.8e-10 68.6 102 35.3
Atru.chr8.2392 Acer truncatum HOM05D000275 ORTHO05D000181 8.5e-10 67.4 93 35.5
Solyc08g067510.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.1e-09 67.0 93 36.6
arahy.Tifrunner.gnm1.ann1.SI4G35 Arachis hypogaea HOM05D000275 ORTHO05D000181 1.4e-09 66.6 118 30.5
Nitab4.5_0004611g0050 Nicotiana tabacum HOM05D000275 ORTHO05D000181 1.4e-09 66.6 88 39.8
arahy.Tifrunner.gnm1.ann1.L0R0IL Arachis hypogaea HOM05D000275 ORTHO05D000181 2.5e-09 65.9 89 32.6
Medtr4g027840 Medicago truncatula HOM05D000275 ORTHO05D000181 3.2e-09 65.5 89 36.0
Atru.chr2.3551 Acer truncatum HOM05D000275 ORTHO05D000181 4.2e-09 65.1 93 37.6
arahy.Tifrunner.gnm1.ann1.ZT56NN Arachis hypogaea HOM05D000275 ORTHO05D000181 4.2e-09 65.1 113 31.9
Medtr4g027800 Medicago truncatula HOM05D000275 ORTHO05D000181 4.2e-09 65.1 89 34.8
Nitab4.5_0000125g0030 Nicotiana tabacum HOM05D000275 ORTHO05D000181 4.2e-09 65.1 93 34.4
Nitab4.5_0002140g0020 Nicotiana tabacum HOM05D000275 ORTHO05D000181 4.2e-09 65.1 112 32.1
CAN.G986.14 Capsicum annuum HOM05D000275 ORTHO05D000181 5.5e-09 64.7 115 32.2
CiPaw.09G101000 Carya illinoinensis HOM05D000275 ORTHO05D003378 5.5e-09 64.7 112 33.9
Lalb_Chr18g0054241 Lupinus albus HOM05D000275 ORTHO05D000181 5.5e-09 64.7 93 37.6
DCAR_020877 Daucus carota HOM05D000275 ORTHO05D000181 7.2e-09 64.3 88 35.2
Psat7g226840 Pisum sativum HOM05D000275 ORTHO05D000181 7.2e-09 64.3 96 32.3
Atru.chr2.3531 Acer truncatum HOM05D000275 ORTHO05D000181 9.4e-09 63.9 93 36.6
SGA_v2.0_scaffold801G53617 Striga asiatica HOM05D000275 ORTHO05D000181 9.4e-09 63.9 89 37.1
Phvul.008G083400 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.2e-08 63.5 117 31.6
SGA_v2.0_scaffold85G26627 Striga asiatica HOM05D000275 ORTHO05D000181 1.2e-08 63.5 91 38.5
Aqoxy4G02402 Aquilegia oxysepala HOM05D000275 ORTHO05D031255 1.6e-08 63.2 90 33.3
Dinv43625 Davidia involucrata HOM05D000275 ORTHO05D000181 2.1e-08 62.8 89 33.7
Actinidia12148 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.7e-08 62.4 88 33.0
arahy.Tifrunner.gnm1.ann1.5IM6J0 Arachis hypogaea HOM05D000275 ORTHO05D000181 2.7e-08 62.4 111 29.7
AUR62006381 Chenopodium quinoa HOM05D000275 ORTHO05D000181 3.6e-08 62.0 93 31.2
PGR031G1907 Punica granatum HOM05D000275 ORTHO05D000181 3.6e-08 62.0 91 33.0
PGSC0003DMG400015092 Solanum tuberosum HOM05D000275 ORTHO05D000181 3.6e-08 62.0 101 36.6
Peaxi162Scf00786g00433 Petunia axillaris HOM05D009669 ORTHO05D000181 4.7e-08 61.6 123 27.6
Migut.M01927 Erythranthe guttata HOM05D000275 ORTHO05D010802 6.1e-08 61.2 114 26.3
MD04G1173800 Malus domestica HOM05D000275 ORTHO05D000181 7.9e-08 60.8 87 33.3
Prupe.6G041600 Prunus persica HOM05D000275 ORTHO05D000181 7.9e-08 60.8 93 34.4
MD03G1052100 Malus domestica HOM05D000275 ORTHO05D000181 1.0e-07 60.5 113 31.9
PSO017G5552 Papaver somniferum HOM05D000275 ORTHO05D000181 1.0e-07 60.5 89 32.6
Actinidia12149 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.4e-07 60.1 108 30.6
Actinidia32496 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.4e-07 60.1 111 28.8
CANSAT35G0461 Cannabis sativa HOM05D000275 ORTHO05D000181 1.4e-07 60.1 118 28.8
Cpa.g.sc489.7 Carica papaya HOM05D000275 ORTHO05D010802 1.4e-07 60.1 112 35.7
Haze_03139 Corylus avellana HOM05D000275 ORTHO05D000181 1.4e-07 60.1 91 34.1
Dinv43623 Davidia involucrata HOM05D000275 ORTHO05D000181 1.4e-07 60.1 80 33.8
Thhalv10002292m.g Eutrema salsugineum HOM05D000275 ORTHO05D003378 1.4e-07 60.1 108 30.6
PSO170G4725 Papaver somniferum HOM05D000275 ORTHO05D000181 1.4e-07 60.1 89 34.8
TAR624G0945 Trochodendron aralioides HOM05D000275 ORTHO05D010802 1.4e-07 60.1 108 29.6
CAN.G986.15 Capsicum annuum HOM05D000275 ORTHO05D000181 1.8e-07 59.7 118 35.6
Manes.14G126100 Manihot esculenta HOM05D000275 ORTHO05D010802 1.8e-07 59.7 113 30.1
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 1.8e-07 59.7 97 38.1
Medtr4g029390 Medicago truncatula HOM05D000275 ORTHO05D000181 1.8e-07 59.7 99 27.3
PGSC0003DMG400016103 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.8e-07 59.7 90 37.8
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.8e-07 59.7 113 31.0
TWI77G0145 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 1.8e-07 59.7 95 33.7
ECA232G3899 Erigeron canadensis HOM05D002156 ORTHO05D029280 2.3e-07 59.3 93 36.6
Sed0022427 Sechium edule HOM05D000275 ORTHO05D000181 2.3e-07 59.3 95 33.7
PGSC0003DMG400036647 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.3e-07 59.3 83 37.3
DCAR_020390 Daucus carota HOM05D000275 ORTHO05D000181 3.0e-07 58.9 89 34.8
Manes.06G051600 Manihot esculenta HOM05D000275 ORTHO05D010802 3.0e-07 58.9 112 31.2
Ciclev10018033m.g Citrus clementina HOM05D000275 ORTHO05D010802 3.9e-07 58.5 120 30.0
Migut.J00045 Erythranthe guttata HOM05D000275 ORTHO05D000181 3.9e-07 58.5 89 30.3
Phvul.008G198500 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 3.9e-07 58.5 115 30.4
AUR62029720 Chenopodium quinoa HOM05D000275 ORTHO05D000181 5.1e-07 58.2 91 31.9
Gohir.A05G112400 Gossypium hirsutum HOM05D000275 ORTHO05D010802 5.1e-07 58.2 113 30.1
Gorai.009G117000 Gossypium raimondii HOM05D000275 ORTHO05D010802 5.1e-07 58.2 113 30.1
Solyc08g067540.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 5.1e-07 58.2 90 36.7
Thecc.06G008800 Theobroma cacao HOM05D000275 ORTHO05D010802 5.1e-07 58.2 116 29.3
Gohir.D05G112800 Gossypium hirsutum HOM05D000275 ORTHO05D010802 6.7e-07 57.8 113 30.1
Manes.06G051500 Manihot esculenta HOM05D000275 ORTHO05D010802 6.7e-07 57.8 110 30.9
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 8.8e-07 57.4 91 30.8
Sabra06G0084300 Salix brachista HOM05D000275 ORTHO05D000181 8.8e-07 57.4 119 31.1
CAN.G199.33 Capsicum annuum HOM05D000275 ORTHO05D000181 1.1e-06 57.0 89 34.8
Cpa.g.c30210.2 Carica papaya HOM05D000275 ORTHO05D010802 1.1e-06 57.0 97 36.1
Carub.0003s2922 Capsella rubella HOM05D000275 ORTHO05D003378 1.5e-06 56.6 99 29.3
Dinv44068 Davidia involucrata HOM05D000275 ORTHO05D000181 1.5e-06 56.6 86 32.6
Phvul.001G062300 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 2.0e-06 56.2 115 29.6
VMungo1383G1763 Vigna mungo HOM05D000275 ORTHO05D000181 2.0e-06 56.2 116 27.6
Cc02_g25070 Coffea canephora HOM05D000275 ORTHO05D000181 2.6e-06 55.8 94 27.7
COL.COLO4_26881 Corchorus olitorius HOM05D000275 ORTHO05D010802 2.6e-06 55.8 118 32.2
COL.COLO4_26882 Corchorus olitorius HOM05D000275 ORTHO05D010802 2.6e-06 55.8 115 33.0
FvH4_3g09850 Fragaria vesca HOM05D006508 ORTHO05D003378 2.6e-06 55.8 121 30.6
FAN11G2582 Fragaria x ananassa HOM05D006508 ORTHO05D003378 2.6e-06 55.8 121 30.6
GSVIVG01021772001 Vitis vinifera HOM05D000275 ORTHO05D010802 2.6e-06 55.8 110 27.3
AL3G47090 Arabidopsis lyrata HOM05D000275 ORTHO05D003378 3.3e-06 55.5 91 30.8
Lalb_Chr07g0188491 Lupinus albus HOM05D000275 ORTHO05D003378 3.3e-06 55.5 121 25.6
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 3.3e-06 55.5 95 30.5
Nn4g24938 Nelumbo nucifera HOM05D000275 ORTHO05D000181 3.3e-06 55.5 94 31.9
Phvul.008G198400 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 3.3e-06 55.5 112 30.4
Phvul.008G198414 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 3.3e-06 55.5 115 29.6
TAR633G0089 Trochodendron aralioides HOM05D000275 ORTHO05D000181 3.3e-06 55.5 88 34.1
Actinidia29298 Actinidia chinensis HOM05D000275 ORTHO05D010802 4.4e-06 55.1 119 29.4
Lalb_Chr03g0043741 Lupinus albus HOM05D000275 ORTHO05D000181 4.4e-06 55.1 88 31.8
SGA_v2.0_scaffold59G20687 Striga asiatica HOM05D000275 ORTHO05D000181 4.4e-06 55.1 91 33.0
Cpa.g.sc15.3 Carica papaya HOM05D000275 ORTHO05D000181 5.7e-06 54.7 87 35.6
TPR.G17318 Trifolium pratense HOM05D000275 ORTHO05D003378 5.7e-06 54.7 99 34.3
Duzib160G0260 Durio zibethinus HOM05D000275 ORTHO05D010802 7.4e-06 54.3 115 30.4
Lalb_Chr14g0366961 Lupinus albus HOM05D007676 ORTHO05D009456 7.4e-06 54.3 115 27.8
Phvul.008G198300 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 7.4e-06 54.3 115 28.7
Medtr1g040330 Medicago truncatula HOM05D000275 ORTHO05D000181 9.7e-06 53.9 97 34.0
Medtr3g046443 Medicago truncatula HOM05D006508 ORTHO05D003378 9.7e-06 53.9 119 30.3


User provided reference genes

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