Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.7e-51 205.7 102 100.0
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 8.5e-51 203.4 102 99.0
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.6e-49 199.1 102 97.1
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.3e-40 168.7 102 80.4
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 8.8e-40 166.8 102 79.4
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 8.2e-38 160.2 102 75.5
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.0e-36 155.6 103 74.8
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 2.7e-28 128.6 98 65.3
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 2.3e-27 125.6 85 70.6
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 6.5e-27 124.0 86 70.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.1e-26 123.2 97 59.8
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 5.5e-26 120.9 87 66.7
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 9.5e-26 120.2 93 60.2
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.0e-25 117.1 86 60.5
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 1.4e-24 116.3 99 60.6
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.8e-24 115.9 98 56.1
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 4.0e-24 114.8 102 54.9
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 6.8e-24 114.0 81 65.4
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 8.9e-24 113.6 95 58.9
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.2e-23 113.2 88 61.4
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.5e-23 112.8 94 59.6
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 3.4e-23 111.7 95 54.7
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 4.4e-23 111.3 95 54.7
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 4.4e-23 111.3 76 69.7
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 9.8e-23 110.2 85 57.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 9.8e-23 110.2 85 57.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 2.8e-22 108.6 99 55.6
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.7e-22 108.2 101 56.4
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 4.9e-22 107.8 78 66.7
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 6.3e-22 107.5 95 52.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 8.3e-22 107.1 101 48.5
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.4e-21 106.3 98 54.1
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.8e-21 105.9 83 62.7
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.4e-21 105.5 81 64.2
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 3.1e-21 105.1 100 48.0
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 3.1e-21 105.1 101 49.5
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 4.1e-21 104.8 101 49.5
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 7.0e-21 104.0 81 63.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 7.0e-21 104.0 101 48.5
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 7.0e-21 104.0 79 65.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 9.2e-21 103.6 81 59.3
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-20 103.2 74 60.8
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.2e-20 103.2 96 50.0
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.6e-20 102.8 99 50.5
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.6e-20 102.8 83 57.8
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.0e-20 102.4 101 55.4
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 2.7e-20 102.1 102 51.0
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 3.5e-20 101.7 82 56.1
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 4.5e-20 101.3 100 50.0
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 5.9e-20 100.9 74 64.9
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.3e-19 99.8 78 62.8
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.7e-19 99.4 77 61.0
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.8e-19 98.2 102 52.9
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.8e-19 98.2 102 52.9
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 5.0e-19 97.8 88 52.3
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 5.0e-19 97.8 78 62.8
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 8.6e-19 97.1 97 47.4
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.1e-18 96.7 102 52.0
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.1e-18 96.7 102 52.0
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 1.1e-18 96.7 101 46.5
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.5e-18 96.3 87 48.3
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.9e-18 95.9 112 44.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.9e-18 95.9 87 48.3
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 2.5e-18 95.5 100 50.0
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 2.5e-18 95.5 80 57.5
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 5.6e-18 94.4 97 52.6
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 5.6e-18 94.4 102 50.0
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.6e-18 94.4 102 50.0
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.6e-18 94.4 102 50.0
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 7.3e-18 94.0 80 60.0
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 7.3e-18 94.0 96 53.1
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 7.3e-18 94.0 76 64.5
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 7.3e-18 94.0 77 62.3
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.2e-17 93.2 74 59.5
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.6e-17 92.8 76 63.2
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 2.1e-17 92.4 74 60.8
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.6e-17 91.7 62 71.0
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 3.6e-17 91.7 78 56.4
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 4.7e-17 91.3 62 71.0
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 6.1e-17 90.9 79 55.7
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 6.1e-17 90.9 68 58.8
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 6.1e-17 90.9 68 61.8
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.0e-16 90.1 74 56.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.8e-16 89.4 79 55.7
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-16 89.0 80 55.0
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 2.3e-16 89.0 74 55.4
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 3.0e-16 88.6 62 62.9
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 3.0e-16 88.6 62 62.9
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 8.9e-16 87.0 70 61.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.6e-15 85.5 62 67.7
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.4e-15 85.1 84 51.2
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.3e-14 83.2 53 84.9
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 2.9e-14 82.0 59 61.0
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.9e-14 82.0 62 59.7
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.8e-13 79.3 61 62.3
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.8e-13 79.3 79 51.9
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.4e-13 79.0 83 54.2
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 2.4e-13 79.0 89 46.1
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.1e-13 78.2 82 53.7
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 5.4e-13 77.8 83 51.8
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 5.4e-13 77.8 56 67.9
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.0e-12 75.9 68 54.4
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.0e-12 75.9 68 54.4
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 3.0e-11 72.0 94 43.6
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 1.5e-10 69.7 94 41.5
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.9e-10 69.3 76 50.0
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 2.5e-10 68.9 72 51.4
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.8e-08 62.8 72 52.8
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.8e-08 62.8 72 52.8
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 4.0e-08 61.6 76 43.4
COL.COLO4_24647 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.0e-07 59.3 43 76.7
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 7.5e-07 57.4 48 60.4
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 7.5e-07 57.4 62 48.4
Pp3c5_22300 Physcomitrium patens HOM05D006948 ORTHO05D008703 2.9e-06 55.5 77 44.2
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 3.7e-06 55.1 66 50.0


User provided reference genes

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