Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G029000 Gossypium hirsutum HOM05D009688 ORTHO05D005549 3.1e-71 271.6 125 100.0
Gorai.004G026100 Gossypium raimondii HOM05D009688 ORTHO05D005549 3.1e-71 271.6 125 100.0
Gohir.A08G018400 Gossypium hirsutum HOM05D009688 ORTHO05D005549 2.6e-65 251.9 125 92.0
Gohir.A08G018300 Gossypium hirsutum HOM05D009688 ORTHO05D005549 6.1e-59 230.7 125 81.6
Gohir.D08G028900 Gossypium hirsutum HOM05D009688 ORTHO05D005549 6.5e-53 210.7 125 78.4
Gorai.004G026000 Gossypium raimondii HOM05D009688 ORTHO05D005549 9.4e-52 206.8 125 77.6
Gohir.D08G029100 Gossypium hirsutum HOM05D009688 ORTHO05D005549 1.8e-39 166.0 138 55.8
Gorai.004G026200 Gossypium raimondii HOM05D009688 ORTHO05D005549 1.8e-39 166.0 138 55.8
Gohir.A08G018500 Gossypium hirsutum HOM05D009688 ORTHO05D005549 2.0e-38 162.5 138 56.5
Gohir.D08G029125 Gossypium hirsutum HOM05D009688 ORTHO05D005549 2.9e-37 158.7 136 55.1
Gorai.004G026400 Gossypium raimondii HOM05D009688 ORTHO05D005549 2.3e-34 149.1 140 52.1
Gohir.D08G029150 Gossypium hirsutum HOM05D009688 ORTHO05D005549 1.8e-31 139.4 136 50.7
Gorai.004G026300 Gossypium raimondii HOM05D009688 ORTHO05D005549 2.3e-26 122.5 121 51.2
Thecc.09G180000 Theobroma cacao HOM05D009688 ORTHO05D005549 5.8e-25 117.9 137 48.9
Gorai.004G026500 Gossypium raimondii HOM05D009688 ORTHO05D005549 9.5e-20 100.5 112 42.0
Gohir.D08G029175 Gossypium hirsutum HOM05D009688 ORTHO05D005549 1.6e-19 99.8 112 42.0
Gohir.A08G018508 Gossypium hirsutum HOM05D009688 ORTHO05D005549 3.6e-19 98.6 112 42.0
MD12G1050000 Malus domestica HOM05D009688 ORTHO05D005549 2.9e-16 89.0 128 34.4
Cpa.g.sc95.33 Carica papaya HOM05D009688 ORTHO05D005549 4.9e-16 88.2 127 35.4
BcaB03g12631 Brassica carinata HOM05D006945 ORTHO05D005549 1.9e-15 86.3 137 37.2
Prupe.1G080000 Prunus persica HOM05D009688 ORTHO05D005549 7.0e-15 84.3 127 34.6
Lj6g0015237 Lotus japonicus HOM05D006945 ORTHO05D005549 2.1e-14 82.8 127 37.0
A08p19430 Brassica napus HOM05D006945 ORTHO05D005549 2.7e-14 82.4 136 37.5
BraA08t33905Z Brassica rapa HOM05D006945 ORTHO05D005549 2.7e-14 82.4 136 37.5
Lj2g0024644 Lotus japonicus HOM05D006945 ORTHO05D005549 3.5e-14 82.0 126 36.5
Prupe.1G079900 Prunus persica HOM05D009688 ORTHO05D005549 1.5e-12 76.6 111 34.2
Sabra18G0112900 Salix brachista HOM05D009688 ORTHO05D005549 1.5e-12 76.6 120 38.3
Glyma.15G164400 Glycine max HOM05D006945 ORTHO05D005549 2.5e-12 75.9 131 35.1
TPR.G30224 Trifolium pratense HOM05D006945 ORTHO05D005549 2.5e-12 75.9 108 37.0
Carub.0007s1055 Capsella rubella HOM05D006945 ORTHO05D005549 3.3e-12 75.5 140 37.1
PGR044G0988 Punica granatum HOM05D006945 ORTHO05D005549 9.5e-12 73.9 131 34.4
FAN17G1318 Fragaria x ananassa HOM05D006945 ORTHO05D005549 2.8e-11 72.4 121 33.9
TPR.G7879 Trifolium pratense HOM05D018581 ORTHO05D005549 2.8e-11 72.4 133 34.6
FvH4_4g06580 Fragaria vesca HOM05D006945 ORTHO05D005549 6.2e-11 71.2 121 33.9
Potri.018G133200 Populus trichocarpa HOM05D009688 ORTHO05D005549 5.2e-10 68.2 131 37.4
C06p15950 Brassica napus HOM05D006945 ORTHO05D005549 1.5e-09 66.6 108 37.0
BolC6t36787H Brassica oleracea HOM05D006945 ORTHO05D005549 1.5e-09 66.6 135 32.6
Medtr2g037190 Medicago truncatula HOM05D018581 ORTHO05D005549 1.5e-09 66.6 135 34.1
A03p59420 Brassica napus HOM05D006945 ORTHO05D005549 2.0e-09 66.2 129 34.1
BcaC08g44188 Brassica carinata HOM05D006945 ORTHO05D005549 2.6e-09 65.9 137 32.1
Atru.chr7.821 Acer truncatum HOM05D009688 ORTHO05D005549 3.4e-09 65.5 87 39.1
Cpa.g.sc95.22 Carica papaya HOM05D006945 ORTHO05D005549 3.4e-09 65.5 108 34.3
A08p19440 Brassica napus HOM05D006945 ORTHO05D005549 4.4e-09 65.1 122 36.1
BraA03t14998Z Brassica rapa HOM05D006945 ORTHO05D005549 4.4e-09 65.1 135 31.9
BraA08t33906Z Brassica rapa HOM05D006945 ORTHO05D005549 4.4e-09 65.1 122 36.1
A03p59240 Brassica napus HOM05D006945 ORTHO05D005549 7.5e-09 64.3 135 31.9
Thhalv10027387m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.7e-08 63.2 126 30.2
C03p88930 Brassica napus HOM05D006945 ORTHO05D005549 2.2e-08 62.8 121 33.9
Psat1g145080 Pisum sativum HOM05D009822 ORTHO05D011160 4.9e-08 61.6 121 30.6
TPR.G30277 Trifolium pratense HOM05D009822 ORTHO05D011160 3.2e-07 58.9 105 29.5
Medtr2g037565 Medicago truncatula HOM05D009822 ORTHO05D011160 7.1e-07 57.8 133 32.3
TPR.G7878 Trifolium pratense HOM05D018581 ORTHO05D005549 7.1e-07 57.8 94 36.2
BolC3t21204H Brassica oleracea HOM05D006945 ORTHO05D005549 1.2e-06 57.0 125 32.0
Medtr2g037380 Medicago truncatula HOM05D009822 ORTHO05D011160 7.8e-06 54.3 121 28.1


User provided reference genes

Program Settings