Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.1e-27 125.9 67 100.0
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 8.1e-26 119.8 67 95.5
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.4e-22 109.0 67 88.1
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.4e-22 109.0 67 88.1
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.4e-22 107.1 67 85.1
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 1.1e-17 92.8 67 71.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.1e-17 92.8 67 71.6
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 2.2e-15 85.1 66 60.6
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 3.8e-15 84.3 66 60.6
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.1e-14 82.8 66 60.6
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 1.1e-14 82.8 66 60.6
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.9e-14 82.0 66 63.6
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.9e-14 82.0 66 59.1
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 2.4e-14 81.6 66 62.1
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 3.2e-14 81.3 66 59.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 5.5e-14 80.5 62 71.0
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 5.5e-14 80.5 65 61.5
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 9.3e-14 79.7 66 59.1
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.2e-13 79.3 65 60.0
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-13 79.3 65 60.0
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.6e-13 79.0 66 59.1
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.6e-13 79.0 66 56.1
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.6e-13 79.0 66 59.1
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.6e-13 79.0 65 60.0
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.6e-13 79.0 66 59.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-13 79.0 66 62.1
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.1e-13 78.6 62 61.3
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.7e-13 78.2 63 61.9
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 3.5e-13 77.8 65 60.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.5e-13 77.8 65 58.5
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 6.0e-13 77.0 66 53.0
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 6.0e-13 77.0 65 58.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 7.9e-13 76.6 64 54.7
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.0e-12 76.3 66 62.1
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.0e-12 76.3 66 62.1
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.3e-12 75.9 66 56.1
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.3e-12 75.1 64 56.2
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 3.9e-12 74.3 66 56.1
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 3.9e-12 74.3 66 53.0
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 3.9e-12 74.3 61 60.7
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 3.9e-12 74.3 65 52.3
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 8.7e-12 73.2 66 59.1
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 8.7e-12 73.2 66 54.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 8.7e-12 73.2 66 57.6
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 8.7e-12 73.2 72 51.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 1.5e-11 72.4 63 55.6
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.9e-11 72.0 67 53.7
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 3.3e-11 71.2 66 56.1
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 3.3e-11 71.2 66 56.1
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 5.6e-11 70.5 66 51.5
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 9.6e-11 69.7 65 47.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 9.6e-11 69.7 66 54.5
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 9.6e-11 69.7 63 55.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.8e-10 68.2 61 60.7
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 8.2e-10 66.6 56 58.9
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 8.2e-10 66.6 80 50.0
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 8.2e-10 66.6 64 51.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 8.2e-10 66.6 67 50.7
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.4e-09 65.9 61 54.1
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.4e-09 65.9 66 50.0
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.8e-09 65.5 92 43.5
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.4e-09 65.1 65 55.4
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 2.4e-09 65.1 66 50.0
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 4.0e-09 64.3 63 52.4
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 5.3e-09 63.9 61 50.8
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 6.9e-09 63.5 59 50.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 9.0e-09 63.2 63 52.4
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 9.0e-09 63.2 63 52.4
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 9.0e-09 63.2 63 52.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.2e-08 62.8 66 47.0
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.5e-08 62.4 63 49.2
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 2.6e-08 61.6 59 49.2
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 4.5e-08 60.8 63 49.2
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 5.8e-08 60.5 66 45.5
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.6e-08 60.1 66 45.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 7.6e-08 60.1 66 45.5
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 7.6e-08 60.1 62 50.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-07 59.7 66 47.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-07 59.7 66 47.0
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.3e-07 59.3 63 47.6
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.7e-07 58.9 66 43.9
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.7e-07 58.9 60 51.7
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 2.9e-07 58.2 66 45.5
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.9e-07 58.2 62 46.8
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.9e-07 58.2 62 46.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 4.9e-07 57.4 66 40.9
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 4.9e-07 57.4 64 46.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 4.9e-07 57.4 66 42.4
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 8.4e-07 56.6 68 47.1
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.9e-06 55.5 59 50.8
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.9e-06 55.5 45 62.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 3.2e-06 54.7 68 45.6
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 5.5e-06 53.9 46 54.3
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 9.3e-06 53.1 52 50.0
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 9.3e-06 53.1 42 61.9


User provided reference genes

Program Settings