Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 9.3e-190 666.8 350 100.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.0e-185 651.4 350 98.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 7.1e-182 640.6 350 96.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 5.3e-145 518.1 348 78.2
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.8e-135 485.3 331 77.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.3e-134 482.3 350 74.3
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.1e-101 371.3 350 59.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 5.8e-99 365.2 346 60.1
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 2.2e-98 363.2 351 57.8
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 2.1e-96 356.7 347 57.1
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 4.6e-96 355.5 343 58.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 5.1e-95 352.1 347 58.2
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 4.3e-94 349.0 350 56.9
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 4.3e-94 349.0 347 55.6
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 9.6e-94 347.8 346 56.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 9.6e-94 347.8 345 58.3
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 4.7e-93 345.5 347 55.3
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 4.7e-93 345.5 351 55.6
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.4e-92 344.0 347 55.6
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 1.4e-92 344.0 346 55.8
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 6.9e-92 341.7 350 54.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 3.8e-90 335.9 351 54.7
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.9e-89 333.6 347 54.8
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.1e-88 330.1 343 56.3
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.9e-87 325.9 350 52.9
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.3e-86 322.4 343 55.7
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 1.3e-85 320.9 352 53.7
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 4.8e-85 318.9 344 52.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.3e-84 315.5 359 53.2
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 7.6e-83 311.6 348 52.3
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 3.8e-82 309.3 345 51.6
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 8.7e-79 298.1 341 49.3
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.5e-78 297.4 347 49.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 5.6e-78 295.4 392 47.2
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.3e-77 294.3 347 49.3
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.6e-77 293.9 348 49.1
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.8e-77 293.1 347 53.0
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.8e-77 293.1 347 49.0
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 5.3e-76 288.9 348 49.7
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 9.0e-76 288.1 350 48.9
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 9.0e-76 288.1 351 48.1
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-75 287.0 349 51.0
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 3.4e-75 286.2 348 49.7
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.5e-75 285.8 348 49.1
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 7.6e-75 285.0 352 49.1
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.3e-74 284.3 347 50.1
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 2.5e-73 280.0 318 52.5
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 3.2e-73 279.6 349 47.6
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 5.5e-73 278.9 350 49.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 7.9e-72 275.0 351 46.2
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.9e-71 272.7 356 46.6
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-70 271.2 349 47.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.5e-70 270.0 337 48.7
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 4.3e-70 269.2 348 46.6
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 7.4e-70 268.5 349 45.8
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 2.8e-69 266.5 353 47.0
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 3.7e-69 266.2 349 45.8
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 5.3e-68 262.3 344 46.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.9e-66 256.5 346 45.7
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.8e-66 256.1 349 45.8
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 8.4e-66 255.0 347 48.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.6e-64 250.8 393 43.3
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 3.5e-64 249.6 348 47.1
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 6.0e-64 248.8 348 46.6
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 7.9e-64 248.4 352 45.5
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.0e-63 248.1 352 44.9
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.8e-63 247.3 381 44.6
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 5.1e-63 245.7 345 44.6
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 5.1e-63 245.7 345 45.5
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 6.7e-63 245.4 352 43.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.5e-62 244.2 355 45.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 2.5e-62 243.4 350 46.0
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.3e-62 243.0 352 45.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 5.7e-62 242.3 348 45.7
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 9.7e-62 241.5 347 43.2
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.3e-61 241.1 351 44.4
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 2.2e-61 240.4 365 42.5
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.8e-61 240.0 351 45.3
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 6.3e-61 238.8 343 43.7
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 2.0e-59 233.8 350 44.6
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 2.6e-59 233.4 348 44.5
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.9e-58 229.9 310 45.8
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-56 224.6 351 43.6
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.6e-56 222.6 345 42.6
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 6.1e-56 222.2 455 34.9
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 6.1e-56 222.2 346 40.5
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 7.9e-56 221.9 369 40.7
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.4e-55 221.1 257 51.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.8e-55 220.7 330 41.2
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.8e-55 220.7 272 51.8
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.0e-55 219.9 355 41.1
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 6.7e-55 218.8 345 39.4
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.8e-55 218.4 209 57.9
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 2.0e-54 217.2 284 45.8
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 4.3e-54 216.1 311 42.4
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 5.7e-54 215.7 358 40.8
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.3e-53 214.5 348 42.2
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 5.9e-51 205.7 337 41.5
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.1e-49 201.4 283 44.2
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.0e-47 194.9 190 57.4
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-47 193.0 271 42.8
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 5.1e-47 192.6 347 39.5
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 8.8e-47 191.8 259 47.9
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 3.3e-46 189.9 354 34.7
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 3.3e-46 189.9 325 40.3
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.2e-45 187.2 361 34.9
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.4e-44 184.5 354 37.3
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.0e-42 178.3 310 36.5
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 2.9e-42 176.8 205 52.7
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.1e-41 174.9 316 40.5
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 3.2e-41 173.3 349 38.1
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.2e-40 171.4 324 36.7
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 5.2e-39 166.0 190 47.9
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.6e-35 153.7 261 40.6
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.9e-34 150.2 209 42.6
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 4.7e-32 142.9 263 40.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 4.7e-32 142.9 263 40.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 4.7e-32 142.9 263 40.7
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.8e-31 141.0 220 43.6
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-30 137.5 219 43.8
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 286 32.9
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 4.4e-30 136.3 120 59.2
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-29 133.7 252 40.9
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.6e-24 117.9 167 44.9
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.7e-24 116.3 67 89.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.7e-22 109.4 67 88.1
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 9.1e-20 102.1 395 27.1
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-19 101.7 134 41.8
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 5.9e-19 99.4 406 25.4
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 4.2e-17 93.2 98 57.1
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-16 91.3 160 40.0
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 6.1e-16 89.4 98 45.9
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 4.4e-14 83.2 92 51.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 3.7e-13 80.1 202 30.7
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.6e-08 63.5 98 39.8
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.0e-07 60.1 45 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 5.2e-07 59.7 183 24.6
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.9e-07 58.9 67 52.2


User provided reference genes

Program Settings