Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 0.0e+00 1231.5 1030 100.0
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 0.0e+00 1211.1 1030 98.2
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.8e-287 992.3 1028 86.0
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 2.3e-276 956.1 572 86.0
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 5.0e-276 954.9 572 86.7
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.5e-275 953.4 572 86.9
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.5e-272 943.3 572 85.3
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 8.3e-271 937.6 571 85.6
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 5.1e-260 901.7 582 81.6
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 1.4e-257 893.6 571 80.0
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 5.2e-257 891.7 567 80.6
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 7.6e-256 887.9 562 80.8
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.1e-254 884.0 568 80.1
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 5.1e-252 875.2 548 81.6
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 6.6e-252 874.8 560 79.8
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 4.3e-251 872.1 567 79.7
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 7.3e-251 871.3 549 80.9
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.2e-250 870.5 567 79.5
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 2.8e-250 869.4 565 79.8
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 1.8e-249 866.7 569 78.9
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 8.9e-249 864.4 568 78.9
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.2e-248 864.0 561 79.5
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.2e-248 864.0 561 79.5
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 7.6e-248 861.3 559 79.1
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 7.6e-248 861.3 548 79.9
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 4.9e-247 858.6 549 79.1
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.4e-246 857.1 570 77.5
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 1.9e-246 856.7 565 78.2
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 9.3e-246 854.4 564 78.2
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 9.3e-246 854.4 564 78.2
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 2.1e-245 853.2 564 78.0
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 4.6e-245 852.0 564 78.0
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 6.0e-245 851.7 564 77.8
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 6.0e-245 851.7 564 78.0
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 1.0e-244 850.9 564 77.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.3e-244 850.5 568 77.3
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 1.7e-244 850.1 565 77.3
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 6.6e-244 848.2 567 77.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.1e-243 847.4 564 76.8
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.9e-243 846.7 570 76.5
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 3.3e-243 845.9 569 77.2
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 5.6e-243 845.1 548 78.5
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 9.6e-243 844.3 574 76.8
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 1.3e-242 844.0 563 77.8
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.3e-242 844.0 565 76.8
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 3.6e-242 842.4 550 79.5
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 3.6e-242 842.4 550 79.5
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 3.6e-242 842.4 574 76.5
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 6.2e-242 841.6 576 76.6
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.2e-242 841.6 549 78.9
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.2e-242 841.6 549 78.9
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.4e-241 839.7 559 76.9
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.9e-241 838.2 559 77.3
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.9e-241 838.2 559 77.3
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 6.9e-241 838.2 555 78.2
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 1.2e-240 837.4 569 76.3
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 2.0e-240 836.6 568 76.8
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 2.0e-240 836.6 564 76.2
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.0e-240 836.6 542 78.0
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 2.0e-240 836.6 577 75.9
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 3.4e-240 835.9 556 78.1
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 5.8e-240 835.1 527 80.5
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 5.8e-240 835.1 527 80.5
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 9.9e-240 834.3 526 80.4
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 9.9e-240 834.3 526 80.4
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 9.9e-240 834.3 629 71.2
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 1.3e-239 833.9 568 75.5
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.7e-239 833.6 549 77.4
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 4.9e-239 832.0 542 78.0
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 6.4e-239 831.6 575 76.0
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.1e-238 830.9 565 75.6
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.4e-238 829.7 567 75.7
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 7.1e-238 828.2 564 75.9
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 7.1e-238 828.2 575 75.8
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 9.3e-238 827.8 552 76.6
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.6e-237 827.0 556 77.5
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 2.7e-237 826.2 532 78.4
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 2.7e-237 826.2 532 78.4
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.7e-237 826.2 574 73.9
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 7.9e-237 824.7 534 77.9
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 7.9e-237 824.7 577 75.2
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 1.0e-236 824.3 551 76.6
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.0e-236 822.8 574 73.7
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 3.0e-236 822.8 571 73.9
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 5.1e-236 822.0 574 73.2
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 6.7e-236 821.6 552 75.2
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 1.1e-235 820.8 587 74.8
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 5.6e-235 818.5 574 72.6
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 5.6e-235 818.5 571 73.7
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 9.6e-235 817.8 552 75.5
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 9.6e-235 817.8 552 75.5
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.6e-234 817.0 566 74.9
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 3.6e-234 815.8 574 72.6
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.1e-233 814.3 574 72.6
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.1e-233 814.3 574 72.5
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.1e-233 814.3 564 73.2
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 9.0e-233 811.2 574 72.3
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 3.8e-231 805.8 529 77.1
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 2.1e-229 800.0 593 71.2
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 5.1e-228 795.4 555 75.3
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 8.7e-228 794.7 560 72.3
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.5e-227 793.9 564 74.5
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 3.3e-227 792.7 573 71.9
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 3.7e-226 789.3 601 70.5
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 6.2e-226 788.5 546 74.9
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.7e-223 780.4 537 75.8
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.4e-222 777.3 564 72.9
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.2e-221 774.2 568 72.5
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 6.0e-221 771.9 579 72.4
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 2.5e-219 766.5 574 70.0
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 3.7e-218 762.7 568 71.0
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 2.0e-216 756.9 575 70.6
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.1e-214 751.1 479 77.5
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 1.6e-213 747.3 576 68.9
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.0e-207 728.0 536 72.0
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.6e-205 719.2 564 67.6
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.8e-202 709.9 449 79.3
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 5.3e-193 679.1 564 65.1
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 2.2e-186 657.1 401 81.5
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.2e-179 634.8 516 64.1
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 2.7e-176 623.6 582 57.6
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 1.4e-172 611.3 426 76.1
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 8.9e-172 608.6 600 57.0
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 5.4e-169 599.4 576 58.0
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 2.6e-163 580.5 405 76.0
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 2.6e-163 580.5 405 76.0
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 4.4e-155 553.1 339 79.6
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 7.8e-152 542.3 421 67.7
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 9.2e-137 492.3 485 53.2
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 2.3e-103 381.3 264 79.5
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 1.4e-100 372.1 419 49.9
DCAR_032163 Daucus carota HOM05D003313 ORTHO05D004217 3.6e-80 304.3 243 65.8
Hund25753 Selenicereus undatus HOM05D003313 ORTHO05D004217 8.0e-80 303.1 279 59.5
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 7.7e-67 260.0 205 72.7
Cpa.g.sc17.16 Carica papaya HOM05D003313 ORTHO05D004217 1.4e-47 196.1 124 78.2
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.2e-39 167.5 171 56.1
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 7.0e-36 157.1 154 53.9
ATR0620G130 Amborella trichopoda HOM05D003313 ORTHO05D004217 5.1e-34 151.0 106 70.8
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 1.5e-33 149.4 492 28.0
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 1.4e-31 142.9 76 85.5
Cpa.g.sc17.17 Carica papaya HOM05D003313 ORTHO05D004217 6.8e-31 140.6 76 85.5
CBR_g53812 Chara braunii HOM05D003313 ORTHO05D004217 3.7e-29 134.8 101 58.4
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 9.5e-25 120.2 171 46.2
EL10Ac6g13974 Beta vulgaris HOM05D000877 ORTHO05D012137 6.8e-23 114.0 80 68.8
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 1.5e-17 96.3 301 28.6
Sed0004563 Sechium edule HOM05D003313 ORTHO05D004217 3.3e-17 95.1 84 60.7
GSVIVG01038281001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.4e-14 85.1 72 66.7
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 1.3e-13 83.2 53 75.5
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.4e-13 80.5 53 73.6
Os01g0653350 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 2.4e-12 79.0 53 73.6
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 3.2e-12 78.6 53 71.7
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 7.1e-12 77.4 53 71.7
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.7e-11 75.5 53 67.9
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.7e-11 75.5 53 66.0
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.3e-10 72.4 97 52.6
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 5.1e-10 71.2 53 64.2
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 6.6e-10 70.9 53 66.0
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.5e-09 69.7 49 69.4
vmacro04716 Vaccinium macrocarpon HOM05D001931 ORTHO05D001891 1.9e-09 69.3 44 75.0
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 7.3e-09 67.4 35 82.9
DCAR_032162 Daucus carota HOM05D003313 ORTHO05D004217 1.5e-06 59.7 93 45.2


User provided reference genes

Program Settings