Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 0.0e+00 1166.4 597 100.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 0.0e+00 1159.4 597 99.3
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 0.0e+00 1142.9 597 97.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.5e-288 995.7 598 84.9
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.6e-282 975.7 597 83.4
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 7.4e-280 966.8 597 82.2
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.6e-245 852.8 598 71.4
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 4.5e-245 851.3 597 71.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.6e-240 835.5 597 70.5
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.7e-236 822.8 587 69.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 8.0e-234 813.9 591 69.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.8e-233 812.8 595 68.6
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.0e-232 809.3 588 69.2
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.3e-231 806.6 623 66.8
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 7.0e-230 800.8 593 69.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 5.6e-227 791.2 595 66.4
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.8e-226 788.9 601 67.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 8.1e-226 787.3 597 66.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.3e-225 785.8 597 65.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.1e-225 785.4 598 67.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.6e-224 782.3 597 65.5
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 4.9e-223 778.1 618 64.1
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 8.3e-223 777.3 587 67.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.7e-221 772.3 594 64.6
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 6.0e-221 771.2 593 66.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.0e-220 768.8 524 72.1
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.1e-220 768.1 602 65.3
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.6e-219 764.6 592 65.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.1e-217 760.4 607 64.6
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.0e-217 758.4 602 64.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.0e-216 756.1 585 64.3
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 4.4e-216 755.0 602 63.6
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 7.6e-216 754.2 612 64.5
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.3e-215 753.4 604 64.6
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.7e-215 753.1 599 64.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.9e-215 751.5 595 63.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-212 743.0 595 63.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.0e-212 742.3 585 65.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.1e-212 741.5 595 63.2
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 6.6e-212 741.1 603 63.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 3.3e-211 738.8 597 62.5
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 3.3e-211 738.8 604 63.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.8e-210 735.7 514 70.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.8e-210 735.7 582 64.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 8.1e-210 734.2 597 61.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.1e-209 733.8 597 60.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.1e-209 733.8 599 63.8
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.4e-209 733.4 593 61.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.1e-209 732.3 595 62.7
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 3.1e-209 732.3 597 62.8
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.0e-209 731.9 590 64.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.9e-209 731.1 593 62.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-208 730.3 603 62.7
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-208 730.3 603 62.9
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.6e-208 729.2 611 62.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.4e-208 728.4 606 62.4
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.4e-208 728.4 611 61.9
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.8e-208 728.0 593 61.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.9e-208 727.2 593 61.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 2.9e-207 725.7 606 61.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.8e-207 725.3 616 62.2
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.8e-207 725.3 603 62.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.1e-206 723.8 516 68.4
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-206 723.8 597 62.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 3.5e-205 718.8 598 62.9
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.5e-205 718.8 608 61.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.0e-205 718.0 594 63.8
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 6.0e-205 718.0 608 61.5
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 7.8e-205 717.6 789 51.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.0e-204 717.2 587 61.8
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.6e-203 711.4 600 62.5
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 9.6e-203 710.7 610 62.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-202 710.3 622 58.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.6e-202 708.8 604 60.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 4.0e-201 705.3 575 61.7
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 6.9e-201 704.5 604 60.3
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 3.8e-199 698.7 598 61.5
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.8e-199 698.7 588 61.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 5.4e-198 694.9 599 61.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.2e-197 693.7 646 57.4
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 6.9e-193 677.9 521 65.5
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 9.0e-193 677.6 590 58.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 6.0e-189 664.8 584 60.6
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.0e-185 652.1 571 61.1
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.5e-184 648.7 590 56.9
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.5e-179 633.6 562 58.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.5e-179 632.9 599 58.3
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.4e-177 627.1 626 55.6
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 9.0e-177 624.4 531 61.2
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.2e-174 615.9 488 63.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 9.7e-171 604.4 591 53.1
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.1e-169 599.0 588 53.4
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.4e-168 595.9 382 78.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.5e-167 591.7 613 52.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.3e-156 556.6 473 60.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.4e-153 546.6 602 49.0
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.0e-153 545.0 356 75.6
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 4.5e-144 515.8 613 48.6
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.7e-119 434.1 452 50.9
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.0e-119 432.6 542 43.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.1e-117 427.2 587 42.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.2e-115 421.4 518 43.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.4e-113 414.5 304 67.8
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.6e-110 402.5 564 40.8
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.0e-103 380.2 332 57.2
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-84 318.2 283 59.4
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 4.0e-84 316.6 216 73.1
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 9.9e-83 312.0 399 45.1
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 4.2e-81 306.6 216 72.7
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 7.4e-78 295.8 278 55.4
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 6.0e-72 276.2 589 31.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 8.2e-69 265.8 181 75.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.0e-66 258.8 291 44.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 7.1e-65 252.7 390 35.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.2e-53 214.5 170 62.9
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.8e-45 186.8 112 76.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.7e-39 166.4 123 61.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.7e-34 151.8 122 66.4
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.8e-31 139.4 271 35.4
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.4e-30 137.1 103 66.0
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.7e-27 127.9 98 59.2
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.0e-26 125.9 386 28.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.9e-25 121.7 576 23.4
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-24 119.0 128 47.7
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 4.7e-24 117.1 74 73.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.2e-23 113.6 112 49.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-22 112.5 101 50.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.4e-22 110.9 162 38.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.8e-20 105.1 138 41.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.7e-19 101.3 77 59.7
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.5e-19 100.5 77 59.7
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.7e-18 98.6 80 56.2
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.4e-15 89.0 177 36.2
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.0e-15 87.4 150 34.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 6.3e-13 80.1 233 27.0
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 9.2e-12 76.3 61 54.1
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.6e-11 75.5 51 62.7
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.7e-11 74.7 58 69.0
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 5.9e-11 73.6 95 40.0
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 6.6e-10 70.1 489 24.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 9.5e-09 66.2 62 58.1
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 9.5e-09 66.2 86 45.3
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 9.5e-09 66.2 137 34.3
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 8.9e-07 59.7 36 69.4


User provided reference genes

Program Settings