Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.9e-102 374.8 187 100.0
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.9e-102 374.8 187 100.0
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.4e-97 357.1 187 95.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 7.4e-93 344.0 186 90.3
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-92 342.4 186 89.2
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-92 342.4 186 89.2
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 9.0e-91 337.0 186 89.8
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.7e-87 325.5 186 86.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 3.9e-86 321.6 183 87.4
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.0e-78 297.0 184 78.3
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 6.7e-78 294.3 184 77.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.0e-77 292.7 184 77.7
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 9.7e-77 290.4 181 78.5
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 6.3e-76 287.7 184 79.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.3e-75 284.6 180 75.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 6.9e-75 284.3 172 79.7
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.2e-74 283.5 184 75.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 2.9e-73 278.9 186 73.7
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 8.5e-73 277.3 189 74.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.1e-72 276.9 181 72.9
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.5e-72 275.8 182 75.3
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 2.5e-72 275.8 184 72.8
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.5e-72 275.8 181 72.4
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.2e-71 273.5 187 72.2
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.4e-70 270.0 177 71.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.8e-70 269.6 184 71.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 3.0e-70 268.9 186 70.4
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 3.0e-70 268.9 186 70.4
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 5.1e-70 268.1 182 72.5
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 5.1e-70 268.1 183 72.7
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 5.1e-70 268.1 180 72.2
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 8.8e-70 267.3 185 71.4
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.1e-69 266.9 171 76.0
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.3e-69 265.4 187 70.1
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 4.4e-69 265.0 185 71.4
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 4.4e-69 265.0 187 66.8
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 4.4e-69 265.0 180 71.7
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 4.4e-69 265.0 188 69.7
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.4e-69 265.0 171 75.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 9.7e-69 263.8 186 69.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.7e-68 263.1 187 70.1
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.2e-68 262.7 187 67.9
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 2.8e-68 262.3 187 68.4
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.8e-68 262.3 187 67.9
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 3.7e-68 261.9 183 67.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 4.8e-68 261.5 182 72.0
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 4.8e-68 261.5 187 67.4
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 4.8e-68 261.5 187 69.5
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 4.8e-68 261.5 183 68.3
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 6.3e-68 261.2 187 67.9
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.2e-68 260.8 187 67.4
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 187 67.4
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.8e-67 259.6 183 67.8
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.8e-67 259.6 186 67.2
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.8e-67 259.6 171 71.3
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.8e-67 259.6 182 69.2
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 2.4e-67 259.2 181 68.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.4e-67 259.2 183 68.3
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.1e-67 258.8 183 68.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 3.1e-67 258.8 187 68.4
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 5.3e-67 258.1 182 68.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 7.0e-67 257.7 185 67.0
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.0e-67 257.7 178 69.1
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 9.1e-67 257.3 183 65.6
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 9.1e-67 257.3 168 73.2
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 9.1e-67 257.3 183 67.8
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.0e-66 256.1 179 69.8
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.0e-66 256.1 180 70.0
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 2.6e-66 255.8 187 65.8
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 5.9e-66 254.6 166 71.7
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 5.9e-66 254.6 195 70.3
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.3e-65 253.4 181 68.0
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.3e-65 253.4 178 69.7
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.7e-65 253.1 192 65.6
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.9e-65 252.3 195 69.2
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 8.5e-65 250.8 183 67.2
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 8.5e-65 250.8 179 69.8
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.1e-64 250.4 191 66.0
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.5e-64 250.0 161 73.9
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.5e-64 249.2 180 67.8
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 3.2e-64 248.8 183 66.1
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 3.2e-64 248.8 183 66.1
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 3.2e-64 248.8 183 66.1
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 3.2e-64 248.8 192 64.1
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 5.5e-64 248.1 183 65.6
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 5.5e-64 248.1 174 69.5
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 7.2e-64 247.7 183 66.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.2e-63 246.9 182 65.4
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 4.7e-63 245.0 180 67.8
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 8.0e-63 244.2 152 73.7
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.4e-62 243.4 174 67.8
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.5e-61 240.0 169 68.0
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 3.3e-61 238.8 181 67.4
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 5.7e-61 238.0 180 66.7
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 9.7e-61 237.3 171 67.3
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.8e-60 235.0 188 62.8
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 4.8e-60 235.0 182 64.3
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 6.3e-60 234.6 162 69.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.8e-59 233.0 172 66.3
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.4e-59 232.6 171 66.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.6e-58 229.9 187 61.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.8e-57 225.3 122 90.2
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-56 223.8 186 62.4
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.2e-56 222.2 123 90.2
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 6.8e-54 214.5 170 63.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.2e-53 213.8 157 65.6
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.5e-50 202.2 150 64.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 3.5e-50 202.2 122 76.2
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 7.7e-50 201.1 173 58.4
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.5e-48 196.8 122 77.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.5e-48 196.1 176 56.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 9.4e-48 194.1 149 64.4
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 8.0e-47 191.0 185 54.6
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.4e-46 190.3 160 60.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 6.8e-46 188.0 146 60.3
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.5e-45 186.8 150 60.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.3e-44 183.7 186 56.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.7e-44 182.2 186 53.8
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.6e-42 176.8 149 59.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.0e-37 159.8 108 69.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.1e-35 154.1 131 52.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.9e-32 143.3 84 83.3
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.3e-32 142.5 186 45.7
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.3e-32 142.5 186 45.7
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 3.3e-32 142.5 126 54.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.8e-31 139.4 92 69.6
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 5.8e-29 131.7 152 44.7
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.6e-26 123.6 183 39.3
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 7.8e-26 121.3 146 44.5
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 9.8e-21 104.4 81 63.0
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 7.1e-19 98.2 146 39.0
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 7.1e-19 98.2 146 39.0
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 4.6e-18 95.5 114 40.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.6e-18 95.5 59 71.2
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.0e-17 94.4 61 70.5
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.7e-09 67.0 55 58.2


User provided reference genes

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