Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G005800 Gossypium raimondii HOM05D000082 ORTHO05D047130 3.8e-70 268.1 138 100.0
Gohir.D08G011932 Gossypium hirsutum HOM05D000082 ORTHO05D047130 5.1e-67 257.7 138 96.4
Gorai.004G002800 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.6e-20 103.2 56 85.7
Gohir.A08G000121 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.6e-15 86.7 57 73.7
Gorai.004G002900 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.6e-15 86.7 57 73.7
Gohir.D08G009750 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.0e-15 86.3 57 71.9
Gohir.A08G001150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.6e-15 85.1 57 71.9
Gohir.A07G199450 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.0e-14 81.6 57 66.7
Gohir.D07G205866 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.0e-14 81.6 57 66.7
Gorai.001G232000 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.0e-14 81.6 57 66.7
Gorai.001G232200 Gossypium raimondii HOM05D000082 ORTHO05D000038 6.6e-14 81.3 57 66.7
Gohir.D08G011866 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.6e-14 80.9 57 70.2
Gohir.D08G055540 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.5e-13 80.1 56 62.5
Gohir.D13G072150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.9e-13 79.7 57 61.4
Duzib268G1827 Durio zibethinus HOM05D000082 ORTHO05D000038 2.5e-13 79.3 56 58.9
Gohir.A13G071833 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.5e-13 79.3 57 61.4
Gohir.D13G074500 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.3e-13 79.0 57 64.9
Gorai.013G085100 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.3e-13 79.0 57 64.9
Gohir.D11G055901 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.3e-13 77.8 56 55.4
Gorai.004G046800 Gossypium raimondii HOM05D000082 ORTHO05D000038 7.3e-13 77.8 57 64.9
Gorai.004G047000 Gossypium raimondii HOM05D000082 ORTHO05D000038 7.3e-13 77.8 57 64.9
Gohir.D08G051222 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gohir.D08G051244 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gohir.D08G051266 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gohir.D08G051288 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gohir.D08G051310 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gorai.004G051200 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 63.2
Gorai.013G082800 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.5e-13 77.4 57 59.6
Gohir.A13G072233 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.6e-12 76.6 57 59.6
Gohir.D08G047575 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-12 76.3 57 63.2
Gorai.007G061100 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.1e-12 76.3 56 55.4
Gohir.D07G205833 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.8e-12 75.9 57 61.4
Gohir.A08G037200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.7e-12 75.1 57 63.2
Gohir.D05G366033 Gossypium hirsutum HOM05D000082 ORTHO05D000038 6.2e-12 74.7 57 63.2
Gohir.D13G074651 Gossypium hirsutum HOM05D000082 ORTHO05D000038 6.2e-12 74.7 57 57.9
Gorai.001G231900 Gossypium raimondii HOM05D000082 ORTHO05D000038 6.2e-12 74.7 57 59.6
Gorai.004G056300 Gossypium raimondii HOM05D000082 ORTHO05D000038 6.2e-12 74.7 56 60.7
Gorai.009G425900 Gossypium raimondii HOM05D000082 ORTHO05D000038 6.2e-12 74.7 57 63.2
Thecc.02G351200 Theobroma cacao HOM05D000082 ORTHO05D000038 6.2e-12 74.7 72 50.0
Gohir.A08G037000 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.1e-12 74.3 57 63.2
Gohir.A08G037100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.1e-12 74.3 57 63.2
Gohir.D05G366066 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.1e-12 74.3 57 59.6
Gohir.D08G047550 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.1e-12 74.3 57 59.6
Gorai.004G046900 Gossypium raimondii HOM05D000082 ORTHO05D000038 8.1e-12 74.3 57 59.6
Gohir.A08G037150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.4e-11 73.6 57 59.6
Gohir.A08G041300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.4e-11 73.6 57 59.6
Gorai.013G085300 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.4e-11 73.6 57 57.9
Thecc.02G352600 Theobroma cacao HOM05D000082 ORTHO05D000038 1.4e-11 73.6 75 46.7
Thecc.02G348200 Theobroma cacao HOM05D000082 ORTHO05D000038 3.1e-11 72.4 72 48.6
Thecc.02G351100 Theobroma cacao HOM05D000082 ORTHO05D000038 3.1e-11 72.4 72 48.6
Thecc.02G353000 Theobroma cacao HOM05D000082 ORTHO05D000038 3.1e-11 72.4 72 48.6
Gohir.A08G041350 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.0e-11 72.0 56 58.9
Thecc.02G351500 Theobroma cacao HOM05D000082 ORTHO05D000038 5.2e-11 71.6 72 48.6
Thecc.02G348000 Theobroma cacao HOM05D000082 ORTHO05D000038 6.8e-11 71.2 72 50.0
Thecc.02G351300 Theobroma cacao HOM05D000082 ORTHO05D000038 6.8e-11 71.2 69 49.3
Gohir.A12G166150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.2e-10 70.5 72 47.2
Gohir.D12G169600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.2e-10 70.5 72 47.2
Gorai.008G182200 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.2e-10 70.5 72 47.2
Thecc.02G348300 Theobroma cacao HOM05D000082 ORTHO05D000038 2.0e-10 69.7 69 47.8
Thecc.02G348400 Theobroma cacao HOM05D000082 ORTHO05D000038 2.0e-10 69.7 72 48.6
Thecc.02G293700 Theobroma cacao HOM05D000082 ORTHO05D000038 2.6e-10 69.3 56 53.6
Thecc.07G132400 Theobroma cacao HOM05D000082 ORTHO05D000038 3.4e-10 68.9 72 47.2
Thecc.02G319000 Theobroma cacao HOM05D000082 ORTHO05D000038 4.4e-10 68.6 73 47.9
COL.COLO4_16608 Corchorus olitorius HOM05D000082 ORTHO05D000038 1.7e-09 66.6 76 46.1
Thecc.02G351600 Theobroma cacao HOM05D000082 ORTHO05D000038 1.7e-09 66.6 72 45.8
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.9e-09 65.1 49 59.2
Gohir.A13G074401 Gossypium hirsutum HOM05D000082 ORTHO05D000038 6.4e-09 64.7 59 54.2
Gohir.A11G052532 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.1e-08 63.9 45 51.1
Gohir.D08G047525 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.1e-08 63.9 42 69.0
Haze_12880 Corylus avellana HOM05D000082 ORTHO05D028617 2.4e-08 62.8 64 45.3
Duzib268G0748 Durio zibethinus HOM05D000082 ORTHO05D000038 3.2e-08 62.4 72 43.1
RcHm_v2.0_Chr7g0180831 Rosa chinensis HOM05D000082 ORTHO05D000038 4.1e-08 62.0 59 45.8
Gohir.D09G013700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-08 61.6 53 50.9
Gorai.006G015800 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-08 61.6 53 50.9
FvH4_5g15260 Fragaria vesca HOM05D000082 ORTHO05D000038 1.2e-07 60.5 55 45.5
FAN18G2006 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.2e-07 60.5 55 45.5
FAN13G1452 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.6e-07 60.1 55 45.5
Gohir.D09G013800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.6e-07 60.1 53 49.1
QL02p082432 Quercus lobata HOM05D000082 ORTHO05D000038 1.6e-07 60.1 54 48.1
Gohir.A02G054700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-07 59.7 48 52.1
Gohir.A09G015100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-07 59.7 55 49.1
COL.COLO4_29194 Corchorus olitorius HOM05D000082 ORTHO05D000038 2.7e-07 59.3 56 50.0
Duzib147G1344 Durio zibethinus HOM05D000082 ORTHO05D000038 2.7e-07 59.3 53 49.1
Gohir.A09G015300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.7e-07 59.3 53 50.9
Gorai.006G015900 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.5e-07 58.9 42 54.8
Thecc.04G083500 Theobroma cacao HOM05D000082 ORTHO05D000038 4.6e-07 58.5 42 54.8
COL.COLO4_00142 Corchorus olitorius HOM05D000082 ORTHO05D000038 6.0e-07 58.2 57 47.4
COL.COLO4_16606 Corchorus olitorius HOM05D000082 ORTHO05D000038 6.0e-07 58.2 57 47.4
PGR142G1017 Punica granatum HOM05D000082 ORTHO05D000038 6.0e-07 58.2 62 45.2
QL10p016159 Quercus lobata HOM05D000082 ORTHO05D000038 6.0e-07 58.2 49 44.9
QL93p0043_0007 Quercus lobata HOM05D000082 ORTHO05D000038 6.0e-07 58.2 49 44.9
Cfa018969 Carpinus fangiana HOM05D000082 ORTHO05D000038 7.8e-07 57.8 56 42.9
COL.COLO4_08440 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.8e-07 57.8 53 47.2
COL.COLO4_22964 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.8e-07 57.8 75 33.3
FAN08G3421 Fragaria x ananassa HOM05D000082 ORTHO05D000038 7.8e-07 57.8 55 41.8
Gohir.D09G014000 Gossypium hirsutum HOM05D000082 ORTHO05D000038 7.8e-07 57.8 53 49.1
PGR142G0709 Punica granatum HOM05D000082 ORTHO05D000038 7.8e-07 57.8 62 45.2
Haze_07353 Corylus avellana HOM05D000082 ORTHO05D000038 1.3e-06 57.0 55 43.6
Gohir.A09G015150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.3e-06 57.0 53 47.2
Gohir.A09G015200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.7e-06 56.6 46 50.0
Gohir.D02G059600 Gossypium hirsutum HOM05D000082 ORTHO05D014197 1.7e-06 56.6 44 52.3
Gohir.D09G013600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.7e-06 56.6 53 47.2
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.7e-06 56.6 53 47.2
Gohir.A09G015400 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.3e-06 56.2 53 45.3
Gorai.005G067200 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.3e-06 56.2 44 52.3
Thecc.04G300800 Theobroma cacao HOM05D000082 ORTHO05D014197 2.3e-06 56.2 50 50.0
FvH4_6g01430 Fragaria vesca HOM05D000082 ORTHO05D000038 3.0e-06 55.8 57 49.1
FAN14G0434 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.0e-06 55.8 57 49.1
FAN05G0156 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.9e-06 55.5 57 49.1
MD14G1196800 Malus domestica HOM05D000082 ORTHO05D000038 3.9e-06 55.5 55 43.6
Manes.18G113400 Manihot esculenta HOM05D000082 ORTHO05D000038 3.9e-06 55.5 51 37.3
SGA_v2.0_scaffold389G50558 Striga asiatica HOM05D000082 ORTHO05D000038 3.9e-06 55.5 54 46.3
Duzib264G0457 Durio zibethinus HOM05D000082 ORTHO05D000038 5.1e-06 55.1 53 47.2
Gorai.006G015700 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.1e-06 55.1 42 50.0
RcHm_v2.0_Chr3g0449061 Rosa chinensis HOM05D000082 ORTHO05D000038 6.6e-06 54.7 56 48.2
AUR62032795 Chenopodium quinoa HOM05D000082 ORTHO05D000038 8.6e-06 54.3 53 43.4
Duzib052G0782 Durio zibethinus HOM05D000082 ORTHO05D014197 8.6e-06 54.3 54 46.3
Gohir.D13G074601 Gossypium hirsutum HOM05D000082 ORTHO05D000038 8.6e-06 54.3 32 62.5
Gorai.013G085200 Gossypium raimondii HOM05D000082 ORTHO05D000038 8.6e-06 54.3 32 62.5


User provided reference genes

Program Settings