Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.8e-205 718.4 362 100.0
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.2e-201 704.5 362 98.3
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 6.1e-168 594.3 358 83.8
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-166 590.1 360 81.1
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 9.7e-166 587.0 359 83.0
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.8e-165 585.5 360 80.6
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 8.2e-165 583.9 360 80.3
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.4e-156 555.8 356 78.1
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-154 549.7 360 78.3
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 4.2e-153 545.0 349 77.4
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.2e-152 543.5 355 76.6
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 3.6e-152 542.0 357 75.1
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.4e-151 540.0 348 76.7
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 4.0e-151 538.5 354 77.1
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.2e-151 538.1 347 76.7
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 6.7e-151 537.7 354 76.6
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 8.8e-151 537.3 348 77.6
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.2e-150 537.0 359 74.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.0e-150 536.2 350 76.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 2.0e-150 536.2 354 76.0
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.3e-150 535.4 348 75.3
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 4.4e-150 535.0 354 77.4
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 5.7e-150 534.6 354 72.6
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 9.7e-150 533.9 349 73.9
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.8e-149 532.3 355 73.2
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.8e-149 532.3 354 76.3
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 8.2e-149 530.8 355 73.0
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.8e-148 529.6 368 73.9
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.4e-148 529.3 348 77.6
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.4e-148 529.3 348 77.3
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.4e-148 529.3 351 76.1
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.3e-148 528.1 351 74.1
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 5.3e-148 528.1 354 73.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.0e-148 527.7 354 73.4
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.6e-147 526.6 351 73.8
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.7e-147 525.8 348 74.1
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.3e-146 523.5 352 75.0
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 5.0e-146 521.5 358 73.7
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 6.5e-146 521.2 352 74.7
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 8.5e-146 520.8 355 74.6
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 8.5e-146 520.8 345 75.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 8.5e-146 520.8 345 75.1
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 2.5e-145 519.2 350 72.3
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.2e-144 516.9 345 73.6
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.6e-144 516.5 349 74.2
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 6.1e-144 514.6 342 75.1
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 8.0e-144 514.2 347 74.4
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.0e-143 513.8 357 71.7
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 3.0e-143 512.3 348 73.3
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.2e-143 511.5 352 73.3
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 8.8e-143 510.8 346 74.0
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.2e-142 510.4 356 71.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.5e-142 510.0 356 70.5
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-142 508.8 346 72.0
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 4.4e-142 508.4 356 70.5
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 4.4e-142 508.4 356 70.5
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 4.4e-142 508.4 356 70.5
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 4.4e-142 508.4 356 70.5
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 4.4e-142 508.4 356 70.2
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 5.7e-142 508.1 339 73.5
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.7e-141 506.5 356 70.2
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.7e-141 506.5 340 73.5
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 3.7e-141 505.4 357 70.9
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 6.3e-141 504.6 350 71.7
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 3.1e-140 502.3 350 71.4
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 5.4e-140 501.5 348 71.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.0e-139 499.6 337 73.9
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 4.5e-139 498.4 348 70.7
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 7.7e-139 497.7 384 66.1
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.2e-138 496.1 348 72.1
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.5e-137 493.4 373 66.8
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.2e-137 492.3 355 69.0
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 4.2e-137 491.9 347 71.2
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 9.5e-137 490.7 337 70.9
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.2e-136 490.3 356 68.8
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-136 490.3 357 69.5
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 2.1e-136 489.6 357 69.2
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.1e-136 489.6 366 68.6
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.8e-136 489.2 351 67.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 8.0e-136 487.6 337 71.2
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.0e-135 487.3 347 70.3
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.8e-135 486.5 341 71.3
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 3.0e-135 485.7 303 77.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.8e-135 484.6 347 71.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.1e-132 477.2 365 69.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.7e-131 472.6 409 62.1
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.3e-129 465.3 349 65.6
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 4.7e-128 461.8 355 66.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.0e-127 459.1 380 62.6
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 9.8e-126 454.1 300 78.0
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-124 450.3 341 69.8
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.4e-124 450.3 294 77.9
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 2.4e-124 449.5 302 71.5
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.2e-124 449.1 339 71.7
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.2e-123 447.2 395 59.5
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.6e-123 446.8 310 72.3
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.7e-123 446.0 339 71.1
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 7.8e-123 444.5 333 70.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.3e-122 443.7 324 69.1
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 2.3e-122 443.0 346 63.6
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.0e-122 442.6 302 75.5
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.5e-121 439.5 293 72.4
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 4.0e-119 432.2 321 68.8
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.8e-119 431.4 350 65.4
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.8e-118 428.3 238 94.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-117 427.2 301 72.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 4.1e-116 422.2 276 72.8
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.0e-114 416.0 293 72.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 5.6e-113 411.8 254 84.3
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.1e-112 407.9 308 66.2
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 6.8e-111 404.8 253 75.9
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.3e-109 400.6 291 69.1
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 6.4e-109 398.3 297 67.7
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 2.4e-108 396.4 253 74.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 7.8e-107 391.3 358 58.4
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 2.3e-106 389.8 296 65.2
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.9e-101 372.9 257 77.0
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.9e-101 372.1 392 54.3
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 5.4e-100 368.6 247 71.7
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.9e-98 362.5 249 73.5
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 8.6e-98 361.3 357 50.7
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.2e-96 357.5 353 50.4
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.7e-96 355.5 255 70.6
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.7e-93 347.1 327 53.8
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.2e-93 346.7 247 73.7
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.4e-92 344.0 300 61.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 4.2e-92 342.4 227 76.7
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 6.6e-90 335.1 357 49.0
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 7.6e-86 321.6 228 72.4
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 5.1e-82 308.9 276 52.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.1e-82 308.9 246 65.0
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.1e-79 301.2 189 76.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.5e-73 280.0 194 70.1
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 2.1e-72 276.9 314 46.8
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.0e-61 241.5 373 41.8
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 4.8e-56 222.6 187 63.1
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 8.5e-53 211.8 168 65.5
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 4.7e-43 179.5 178 56.7
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 5.0e-29 132.9 97 64.9
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.1e-28 131.7 126 60.3
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-25 121.7 72 75.0
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 2.6e-25 120.6 72 75.0
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 2.6e-25 120.6 73 76.7
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 2.6e-25 120.6 72 75.0
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 5.7e-25 119.4 72 76.4
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 5.4e-23 112.8 63 79.4
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-17 94.7 94 54.3
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 3.2e-07 60.5 40 70.0


User provided reference genes

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